RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.54□□□□□ -1.04
USP54-203ENST00000418501 TMEM63AO94886 807 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 ZDHHC11BP0C7U3 371 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 IRF1P10914 325 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 DNAJB1P25685 340 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 TYK2P29597 1187 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 SSTR1P30872 391 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 CORO1AP31146 461 aaKnown RBP8.54□□□□□ -1.04
USP54-203ENST00000418501 SERPINH1P50454 418 aaKnown RBP8.54□□□□□ -1.04
USP54-203ENST00000418501 CACNA2D1P54289 1103 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 CAP1Q01518 475 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 GUCY1A3Q02108 690 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 GRM3Q14832 879 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 AARS2Q5JTZ9 985 aaKnown RBP8.54□□□□□ -1.04
USP54-203ENST00000418501 FNBP1LQ5T0N5 605 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 ANKRD22Q5VYY1 191 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 TRABD2AQ86V40 505 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 ZNF689Q96CS4 500 aaPredicted RBP8.54□□□□□ -1.04
USP54-203ENST00000418501 APOPT1Q96IL0 206 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 SLC39A8Q9C0K1 460 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 C10orf88Q9H8K7 445 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 SCUBE2Q9NQ36 999 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 MSRAQ9UJ68 235 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 TCRBV9S1A1TA0A576 114 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 TRIM49D1C9J1S8 452 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 GSTA1P08263 222 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 RASSF2P50749 326 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 GNA12Q03113 381 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 SULT2A1Q06520 285 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 MRNIPQ6NTE8 343 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 TTC8Q8TAM2 541 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 RAB3IL1Q8TBN0 382 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 PTPRN2Q92932 1015 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 PEX13Q92968 403 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 PITPNM3Q9BZ71 974 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 KIF9Q9HAQ2 790 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 RABGEF1Q9UJ41 708 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 GOLGA8QA0A0J9YX86 632 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 GOLGA8OA6NCC3 632 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 C2orf81A6NN90 581 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 GOLGA8NF8WBI6 632 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 ZBTB24O43167 697 aaPredicted RBP8.54□□□□□ -1.04
USP54-203ENST00000418501 MYL4P12829 197 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 TAC1P20366 129 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 GABRR2P28476 465 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 BMPR1AP36894 532 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 GYS2P54840 703 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 FBXL22Q6P050 247 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 KYAT3Q6YP21 454 aaKnown RBP8.54□□□□□ -1.04
USP54-203ENST00000418501 MARK2Q7KZI7 788 aaKnown RBP8.54□□□□□ -1.04
USP54-203ENST00000418501 DENND1CQ8IV53 801 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 CERS2Q96G23 380 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 TGS1Q96RS0 853 aaKnown RBP8.54□□□□□ -1.04
USP54-203ENST00000418501 IL12RB2Q99665 862 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 LMAN2LQ9H0V9 348 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 ACTR5Q9H9F9 607 aaPredicted RBP8.54□□□□□ -1.04
USP54-203ENST00000418501 KIAA1522Q9P206 1035 aaPredicted RBP8.54□□□□□ -1.04
USP54-203ENST00000418501 SLC25A13Q9UJS0 675 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 SNUPNO95149 360 aaKnown RBP8.54□□□□□ -1.04
USP54-203ENST00000418501 EPOP01588 193 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 ATP5BP06576 529 aaKnown RBP8.54□□□□□ -1.04
USP54-203ENST00000418501 PRKCHP24723 683 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 RAPH1Q70E73 1250 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 TFAP2DQ7Z6R9 452 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 OTUB2Q96DC9 234 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 CCT8L2Q96SF2 557 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 TCF25Q9BQ70 676 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 CLSTN3Q9BQT9 956 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 CASS4Q9NQ75 786 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 PFDN4Q9NQP4 134 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 MRGBPQ9NV56 204 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 NUDT5Q9UKK9 219 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 SOX13Q9UN79 622 aa8.54□□□□□ -1.04
USP54-203ENST00000418501 PMPCBO75439 489 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 DCTN3O75935 186 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 METTL18O95568 372 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 C8AP07357 584 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 ACRP10323 421 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 KRT4P19013 534 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 PMLP29590 882 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 GPR15P49685 360 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 PITX1P78337 314 aaPredicted RBP8.53□□□□□ -1.04
USP54-203ENST00000418501 SLC10A2Q12908 348 aaPredicted RBP8.53□□□□□ -1.04
USP54-203ENST00000418501 ITIH4Q14624 930 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 INSCQ1MX18 579 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 KBTBD12Q3ZCT8 623 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 OTUD1Q5VV17 481 aaPredicted RBP8.53□□□□□ -1.04
USP54-203ENST00000418501 UNC5AQ6ZN44 842 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 KIAA0408Q6ZU52 694 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 PRUNE1Q86TP1 453 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 MFN1Q8IWA4 741 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 CARNMT1Q8N4J0 409 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 DDI1Q8WTU0 396 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 OSBPL7Q9BZF2 842 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 VPS11Q9H270 941 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 CCDC134Q9H6E4 229 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 TLR9Q9NR96 1032 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 VPS28Q9UK41 221 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 WASHC5Q12768 1159 aa8.53□□□□□ -1.04
USP54-203ENST00000418501 CCDC142Q17RM4 750 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms