RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 ZNF483Q8TF39 744 aaPredicted RBP12.64□□□□□ -0.39
VPS13A-204ENST00000376634 DPF3Q92784 378 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 MCCC1Q96RQ3 725 aaPredicted RBP12.64□□□□□ -0.39
VPS13A-204ENST00000376634 DEFB129Q9H1M3 183 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 TRHDEQ9UKU6 1024 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 ZNF521Q96K83 1311 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 PIK3C2BO00750 1634 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 MMP13P45452 471 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 PTPN11Q06124 597 aaPredicted RBP12.64□□□□□ -0.39
VPS13A-204ENST00000376634 OLFML1Q6UWY5 402 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 SPOCD1Q6ZMY3 1216 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 HGH1Q9BTY7 390 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 CRNNQ9UBG3 495 aaPredicted RBP12.64□□□□□ -0.39
VPS13A-204ENST00000376634 PPRC1Q5VV67 1664 aaKnown RBP12.64□□□□□ -0.39
VPS13A-204ENST00000376634 CCDC162PA2VCL2 907 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 PQBP1O60828 265 aaKnown RBP12.64□□□□□ -0.39
VPS13A-204ENST00000376634 PLEKHH3Q7Z736 793 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 CLVS1Q8IUQ0 354 aaPredicted RBP12.64□□□□□ -0.39
VPS13A-204ENST00000376634 NEK7Q8TDX7 302 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 RXFP2Q8WXD0 754 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 ISCA1Q9BUE6 129 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 PPP1R3GB7ZBB8 358 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 NPTX2P47972 431 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 GCLCP48506 637 aaPredicted RBP12.64□□□□□ -0.39
VPS13A-204ENST00000376634 PFKFB4Q16877 469 aa12.64□□□□□ -0.39
VPS13A-204ENST00000376634 BHLHE22Q8NFJ8 381 aaPredicted RBP12.64□□□□□ -0.39
VPS13A-204ENST00000376634 POP1Q99575 1024 aaKnown RBP12.64□□□□□ -0.39
VPS13A-204ENST00000376634 AVILO75366 819 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 FARP2O94887 1054 aaPredicted RBP12.63□□□□□ -0.39
VPS13A-204ENST00000376634 PRKAR1AP10644 381 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 EPORP19235 508 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 CAPGP40121 348 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 IDH2P48735 452 aaKnown RBP12.63□□□□□ -0.39
VPS13A-204ENST00000376634 PALB2Q86YC2 1186 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 HPS6Q86YV9 775 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 TMPRSS6Q8IU80 811 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 SLC37A4O43826 429 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 FAM228BP0C875 321 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 SPIRE1Q08AE8 756 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 CYP2R1Q6VVX0 501 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 DEFB128Q7Z7B8 93 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 PTPRHQ9HD43 1115 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 DDX20Q9UHI6 824 aaKnown RBP12.63□□□□□ -0.39
VPS13A-204ENST00000376634 OR10H1Q9Y4A9 318 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 TCEA3O75764 348 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 LCA5LO95447 670 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 CYP1A1P04798 512 aaPredicted RBP12.63□□□□□ -0.39
VPS13A-204ENST00000376634 TCF4P15884 667 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 RPL4P36578 427 aaKnown RBP12.63□□□□□ -0.39
VPS13A-204ENST00000376634 CLCN3P51790 818 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 SNX6Q9UNH7 406 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 CHP2O43745 196 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 PTPN1P18031 435 aaKnown RBP12.63□□□□□ -0.39
VPS13A-204ENST00000376634 MYL9P24844 172 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 CXCR2P25025 360 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 GMPSP49915 693 aaPredicted RBP12.63□□□□□ -0.39
VPS13A-204ENST00000376634 MYBPC1Q00872 1141 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 INSCQ1MX18 579 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 FBXL19Q6PCT2 694 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 SYT12Q8IV01 421 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 BSNDQ8WZ55 320 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 EDEM1Q92611 657 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 DLG3Q92796 817 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 ERGIC3Q9Y282 383 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 CYP11B2P19099 503 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 RPL3P39023 403 aaKnown RBP12.63□□□□□ -0.39
VPS13A-204ENST00000376634 SMIM11AP58511 58 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 ITGADQ13349 1161 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 CACUL1Q86Y37 369 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 CLIP3Q96DZ5 547 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 CELF6Q96J87 481 aaKnown RBP12.63□□□□□ -0.39
VPS13A-204ENST00000376634 PDLIM2Q96JY6 352 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 SLC25A23Q9BV35 468 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 SLC4A5Q9BY07 1137 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 CDK7P50613 346 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 AKR1D1P51857 326 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 WASHC2DQ5SRD0 308 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 ACTL9Q8TC94 416 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 GRIN3AQ8TCU5 1115 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 FAM151AQ8WW52 585 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 HTR3CQ8WXA8 447 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 FAM126AQ9BYI3 521 aaPredicted RBP12.63□□□□□ -0.39
VPS13A-204ENST00000376634 ZDHHC6Q9H6R6 413 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 CDHR5Q9HBB8 845 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 CCDC59Q9P031 241 aaKnown RBP12.63□□□□□ -0.39
VPS13A-204ENST00000376634 DMGDHQ9UI17 866 aaKnown RBP12.63□□□□□ -0.39
VPS13A-204ENST00000376634 ANGPT4Q9Y264 503 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 MT-CO1P00395 513 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 FAAH2Q6GMR7 532 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 SAMD3Q8N6K7 520 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 ME2P23368 584 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 SERPINA4P29622 427 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 NR1D2Q14995 579 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 QPRTQ15274 297 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 RBM43Q6ZSC3 357 aaKnown RBP12.63□□□□□ -0.39
VPS13A-204ENST00000376634 ARHGEF19Q8IW93 802 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 KLHL23Q8NBE8 558 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 TOR4AQ9NXH8 423 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 COG5Q9UP83 839 aa12.63□□□□□ -0.39
VPS13A-204ENST00000376634 ANKDD1BA6NHY2 528 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms