RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 PIK3R1P27986 724 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 USP39Q53GS9 565 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 LRP10Q7Z4F1 713 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 GPSM1Q86YR5 675 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 PHACTR4Q8IZ21 702 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 MRPL48Q96GC5 212 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 CYLDQ9NQC7 956 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 UBA2Q9UBT2 640 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 ANAPC2Q9UJX6 822 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 UBIAD1Q9Y5Z9 338 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 KPNA4O00629 521 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 USP17L7P0C7H9 530 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 PABPC1P11940 636 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 PAX7P23759 505 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 PTDSS1P48651 473 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 ACSM2AQ08AH3 577 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 INAQ16352 499 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 ACSM2BQ68CK6 577 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 TTC27Q6P3X3 843 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 NET1Q7Z628 596 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 FGD2Q7Z6J4 655 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 STK40Q8N2I9 435 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 FBXW8Q8N3Y1 598 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 DPP10Q8N608 796 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 C19orf18Q8NEA5 215 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 EBNA1BP2Q99848 306 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 MRPS26Q9BYN8 205 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 ADPRHL2Q9NX46 363 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 ADAM30Q9UKF2 790 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 CD3EAPO15446 510 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 RGS14O43566 566 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 STAU1O95793 577 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 LTA4HP09960 611 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 CCDC130P13994 396 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 PTPN1P18031 435 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 BDNFP23560 247 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 RXRGP48443 463 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 RPL7AP62424 266 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 BOP1Q14137 746 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 TTC23Q5W5X9 447 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 TMEM132CQ8N3T6 1108 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 ACE2Q9BYF1 805 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 ZCCHC2Q9C0B9 1178 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 SYNDIG1Q9H7V2 258 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 SMPD4Q9NXE4 827 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 OPTCQ9UBM4 332 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 CPA4Q9UI42 421 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 ZNF541Q9H0D2 1346 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 hCG_1818297A0A087WSY0 165 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 IFRD1O00458 451 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 TGFB1I1O43294 461 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 RTN3O95197 1032 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 CALCAP01258 141 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 INHBEP58166 350 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 SFSWAPQ12872 951 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 NOGQ13253 232 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 RSBN1Q5VWQ0 802 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 CYP4Z2PQ8N1L4 340 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 CERS5Q8N5B7 392 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 PGLYRP2Q96PD5 576 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 MTG1Q9BT17 334 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 STK39Q9UEW8 545 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 DAPK2Q9UIK4 370 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 ZMYND8Q9ULU4 1186 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 KLHL20Q9Y2M5 609 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 RGSL1A5PLK6 1076 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 OPLAHO14841 1288 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 FGF10O15520 208 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-203ENST00000372407 OR56A5P0C7T3 313 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 CHKAP35790 457 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 FKBP1BP68106 108 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 CRADDP78560 199 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 DCTN2Q13561 401 aaKnown RBP11.58□□□□□ -0.56
PTPRF-203ENST00000372407 ATP1A4Q13733 1029 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 SPANXN2Q5MJ10 180 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 FAM171A1Q5VUB5 890 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 NPNTQ6UXI9 565 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 ITIH5Q86UX2 942 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 TRABD2AQ86V40 505 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 HEATR4Q86WZ0 1026 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 LGI2Q8N0V4 545 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 BHLHE22Q8NFJ8 381 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-203ENST00000372407 GAD1Q99259 594 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 ZNF670Q9BS34 389 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 TSEN34Q9BSV6 310 aaKnown RBP11.58□□□□□ -0.56
PTPRF-203ENST00000372407 WDR18Q9BV38 432 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 OSGEPL1Q9H4B0 414 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 ABCC13Q9NSE7 274 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 FAM50BQ9Y247 325 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 CLTBP09497 229 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 HOXC6P09630 235 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 CCDC166P0CW27 439 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 ALDH9A1P49189 494 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 GPR15P49685 360 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 ST13P50502 369 aaKnown RBP11.58□□□□□ -0.56
PTPRF-203ENST00000372407 C21orf59P57076 290 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 RGMBQ6NW40 437 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 CASP12Q6UXS9 341 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 PIGZQ86VD9 579 aa11.58□□□□□ -0.56
PTPRF-203ENST00000372407 ADHFE1Q8IWW8 467 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms