RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 A6NNZ2 444 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 CHADO15335 359 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 SOAT1P35610 550 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 OCRLQ01968 901 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 LRRC74AQ0VAA2 488 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 LRRC14Q15048 493 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 FAM214AQ32MH5 1076 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 LY6G5CQ5SRR4 150 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 ATAD3BQ5T9A4 648 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 FAM109BQ6ICB4 259 aaPredicted RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 ARHGEF2Q92974 986 aaKnown RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 TUBGCP2Q9BSJ2 902 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 RAB17Q9H0T7 212 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 PGAP2Q9UHJ9 254 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 ESPNB1AK53 854 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 SDC3O75056 442 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 SRP72O76094 671 aaKnown RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 SNAI1O95863 264 aaPredicted RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 ARF4P18085 180 aaPredicted RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 VIPR2P41587 438 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 GPC5P78333 572 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 BRD3Q15059 726 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 TMCO2Q7Z6W1 182 aaPredicted RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 RHOT2Q8IXI1 618 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 PARP9Q8IXQ6 854 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 NDRG1Q92597 394 aaKnown RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 UCN3Q969E3 161 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 PURBQ96QR8 312 aaKnown RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 IFT80Q9P2H3 777 aaPredicted RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 SUFUQ9UMX1 484 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 PRRG2O14669 202 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 ZBTB14O43829 449 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 TFPIP10646 304 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 CYP3A5P20815 502 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 ICAM3P32942 547 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 KCNQ1P51787 676 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 C14orf28Q4W4Y0 310 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 SLC30A9Q6PML9 568 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 CAPN12Q6ZSI9 719 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 FAM126BQ8IXS8 530 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 MS4A4AQ96JQ5 239 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 NECAB3Q96P71 396 aaPredicted RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 CCNL2Q96S94 520 aaPredicted RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 POLR1EQ9GZS1 481 aaKnown RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 THAP9Q9H5L6 903 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 AGPAT5Q9NUQ2 364 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 ABCB8Q9NUT2 735 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 MROH2AA6NES4 1674 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 ATXN2Q99700 1313 aaKnown RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 UBXN7O94888 489 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 BMP1P13497 986 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 GTF2H1P32780 548 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 SRP14P37108 136 aaKnown RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 FOLR3P41439 243 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 DCTN2Q13561 401 aaKnown RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 PAGE2BQ5JRK9 111 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 CEACAM20Q6UY09 585 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 CHST15Q7LFX5 561 aaPredicted RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 ICA1LQ8NDH6 482 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 C7orf43Q8WVR3 580 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 GMLQ99445 158 aa8.55□□□□□ -1.04
HMGB1-203ENST00000341423 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.55□□□□□ -1.04
HMGB1-203ENST00000341423 NTSP30990 170 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 PRCPP42785 496 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 CLK2P49760 499 aaKnown RBP8.54□□□□□ -1.04
HMGB1-203ENST00000341423 PCBP4P57723 403 aaKnown RBP8.54□□□□□ -1.04
HMGB1-203ENST00000341423 ARHGAP1Q07960 439 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 INTS6LQ5JSJ4 861 aaKnown RBP8.54□□□□□ -1.04
HMGB1-203ENST00000341423 FHL5Q5TD97 284 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 SV2AQ7L0J3 742 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 SGMS1Q86VZ5 419 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 ZDHHC17Q8IUH5 632 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 RLN3Q8WXF3 142 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 REPS1Q96D71 796 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 ACBD6Q9BR61 282 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 WRAP53Q9BUR4 548 aaKnown RBP8.54□□□□□ -1.04
HMGB1-203ENST00000341423 TWSG1Q9GZX9 223 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 POPDC2Q9HBU9 364 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 UBIAD1Q9Y5Z9 338 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 E2F8A0AVK6 867 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 CD38P28907 300 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 CMPK1P30085 196 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 BMP8BP34820 402 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 NRG3P56975 720 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 ECT2LQ008S8 904 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 BIKQ13323 160 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 KRT31Q15323 416 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 TRIP6Q15654 476 aaKnown RBP8.54□□□□□ -1.04
HMGB1-203ENST00000341423 Q4G0T1 1027 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 HP1BP3Q5SSJ5 553 aaPredicted RBP8.54□□□□□ -1.04
HMGB1-203ENST00000341423 SARM1Q6SZW1 724 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 MAMDC4Q6UXC1 1216 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 ANKRD33Q7Z3H0 272 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 ELMO1Q92556 727 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 MED8Q96G25 268 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 TOE1Q96GM8 510 aaKnown RBP8.54□□□□□ -1.04
HMGB1-203ENST00000341423 PAGE5Q96GU1 130 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 PTPN18Q99952 460 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 ZYG11BQ9C0D3 744 aa8.54□□□□□ -1.04
HMGB1-203ENST00000341423 ZNF214Q9UL59 606 aaPredicted RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms