RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 MARC1Q5VT66 337 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 IPMKQ8NFU5 416 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 BCAS4Q8TDM0 211 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 NSMCE1Q8WV22 266 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 ATXN2LQ8WWM7 1075 aaKnown RBP13.64□□□□□ -0.23
HMGB1-202ENST00000339872 AZIN2Q96A70 460 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 CENPTQ96BT3 561 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 ZFRQ96KR1 1074 aaKnown RBP13.64□□□□□ -0.23
HMGB1-202ENST00000339872 SMC6Q96SB8 1091 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 EPN3Q9H201 632 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 NT5MQ9NPB1 228 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 CHD5Q8TDI0 1954 aa13.64□□□□□ -0.23
HMGB1-202ENST00000339872 IQANK1A0A1B0GTG1 560 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 SCAMP3O14828 347 aaKnown RBP13.63□□□□□ -0.23
HMGB1-202ENST00000339872 TSPAN3O60637 253 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 SPAG7O75391 227 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 FAM155BO75949 473 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 GLUD1P00367 558 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 IFNAR2P48551 515 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 SGSHP51688 502 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 GEMP55040 296 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 CDH4P55283 916 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 CDH17Q12864 832 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 LRRC14Q15048 493 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 ADGRF1Q5T601 910 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 LINC00523Q86TU6 105 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 SLC26A11Q86WA9 606 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 KLHDC8BQ8IXV7 354 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 UNC5BQ8IZJ1 945 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 HS6ST3Q8IZP7 471 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 ELMOD1Q8N336 334 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 TTC16Q8NEE8 873 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 POF1BQ8WVV4 589 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 FATE1Q969F0 183 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 PPP1R2P1Q96PQ5 205 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 TBL1YQ9BQ87 522 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 C17orf80Q9BSJ5 609 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 MTIF3Q9H2K0 278 aaKnown RBP13.63□□□□□ -0.23
HMGB1-202ENST00000339872 MLXIPLQ9NP71 852 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 LZTS1Q9Y250 596 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 MYLKQ15746 1914 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 MTCL1Q9Y4B5 1905 aaKnown RBP13.63□□□□□ -0.23
HMGB1-202ENST00000339872 LINC01553A4QN01 128 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 C2orf71A6NGG8 1288 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 FAM159BA6NKW6 160 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 ATP9BO43861 1147 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 POLBP06746 335 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 HDCP19113 662 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 DNAJB1P25685 340 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 MAXP61244 160 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 IL10RBQ08334 325 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 ITKQ08881 620 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 MPP2Q14168 576 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 CERCAMQ5T4B2 595 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 CES3Q6UWW8 571 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 GAREM2Q75VX8 874 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 SPRED2Q7Z698 418 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 TMC8Q8IU68 726 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 MZB1Q8WU39 189 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 DYDC1Q8WWB3 177 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 MRPS31Q92665 395 aaKnown RBP13.63□□□□□ -0.23
HMGB1-202ENST00000339872 FICDQ9BVA6 458 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 FSD1LQ9BXM9 530 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 TLR9Q9NR96 1032 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 NKIRAS1Q9NYS0 192 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 MOCS1Q9NZB8 636 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 IRAK3Q9Y616 596 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 RPS6KL1Q9Y6S9 549 aa13.63□□□□□ -0.23
HMGB1-202ENST00000339872 A0A0D9SEW6 157 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 UGT1A9O60656 530 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 PMPCBO75439 489 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 TPH1P17752 444 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 KRT4P19013 534 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 ETFBP38117 255 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 GNA12Q03113 381 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 SMAD1Q15797 465 aaKnown RBP13.62□□□□□ -0.23
HMGB1-202ENST00000339872 MAB21L3Q8N8X9 362 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 MRPL43Q8N983 215 aaKnown RBP13.62□□□□□ -0.23
HMGB1-202ENST00000339872 OR52K2Q8NGK3 314 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 ZNF669Q96BR6 464 aaPredicted RBP13.62□□□□□ -0.23
HMGB1-202ENST00000339872 DDX50Q9BQ39 737 aaKnown RBP13.62□□□□□ -0.23
HMGB1-202ENST00000339872 UGT1A7Q9HAW7 530 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 UGT1A10Q9HAW8 530 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 UGT1A8Q9HAW9 530 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 CPQQ9Y646 472 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 A0A1B0GVM2 712 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 TCAF2A6NFQ2 919 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 FAM47DPA6NHR8 397 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 H3BNC9 293 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 AP3B1O00203 1094 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 CCL16O15467 120 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 CLDN11O75508 207 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 ALDH1A2O94788 518 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 OLFM2O95897 454 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 CKMP06732 381 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 GBP2P32456 591 aaPredicted RBP13.62□□□□□ -0.23
HMGB1-202ENST00000339872 NPY2RP49146 381 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 SPANXN3Q5MJ09 141 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 IL31Q6EBC2 164 aa13.62□□□□□ -0.23
HMGB1-202ENST00000339872 TAX1BP1Q86VP1 789 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms