RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ARHGEF38Q9NXL2 777 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 TBX10O75333 385 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 PMPCBO75439 489 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 HSPA4LO95757 839 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 FLT3LGP49771 235 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 SLC25A3Q00325 362 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 GRIK3Q13003 919 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 CTBP1Q13363 440 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 ITGA7Q13683 1181 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 RGMBQ6NW40 437 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 SCD5Q86SK9 330 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 CLEC14AQ86T13 490 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 RPAINQ86UA6 219 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 SPNS2Q8IVW8 549 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 DENND6AQ8IWF6 608 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 NRG4Q8WWG1 115 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 PPP1R36Q96LQ0 422 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 ZIC5Q96T25 663 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 TBL1YQ9BQ87 522 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 FICDQ9BVA6 458 aa18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 UNKQ9C0B0 810 aaKnown RBP18.67■□□□□ 0.58
SHKBP1-201ENST00000291842 TK2O00142 265 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 ZNF195O14628 629 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 TIMM44O43615 452 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 MAFKO60675 156 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 VAPBO95292 243 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 MPOP05164 745 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 CCR10P46092 362 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 HARS2P49590 506 aaKnown RBP18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 COG7P83436 770 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 CACNB2Q08289 660 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 EIF4EBP2Q13542 120 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 PEX6Q13608 980 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 DSC3Q14574 896 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 SLC39A12Q504Y0 691 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 C14orf80Q86SX3 495 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 ULK2Q8IYT8 1036 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 ARHGAP24Q8N264 748 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 FTHL17Q9BXU8 183 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 TASP1Q9H6P5 420 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 ABCC13Q9NSE7 274 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 ABI2Q9NYB9 513 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 LRRC42Q9Y546 428 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 A0A1W2PQH9 124 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 AOC1P19801 751 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 CCNCP24863 283 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 GABRB3P28472 473 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 CCR1P32246 355 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 TUBP50607 506 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 RAB27AP51159 221 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 ZNF135P52742 658 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 ZNF460Q14592 562 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 SAPCD2Q86UD0 394 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 ZNF280BQ86YH2 543 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 SPATA6LQ8N4H0 392 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 SLC25A41Q8N5S1 370 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 COG4Q9H9E3 785 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 OSER1Q9NX31 292 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 SLC2A6Q9UGQ3 507 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 DSEQ9UL01 958 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 NOD1Q9Y239 953 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 WASF2Q9Y6W5 498 aa18.66■□□□□ 0.58
SHKBP1-201ENST00000291842 MAGEC1O60732 1142 aa18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 ADAMTS4O75173 837 aa18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 ZNF189O75820 626 aaPredicted RBP18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 AHSGP02765 367 aa18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 CCND3P30281 292 aaPredicted RBP18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 GPR15P49685 360 aa18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 MPP1Q00013 466 aa18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 YWHAHQ04917 246 aaPredicted RBP18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 USP10Q14694 798 aaKnown RBP18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 ESRP1Q6NXG1 681 aaKnown RBP18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 LINC00523Q86TU6 105 aa18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 ZC3HC1Q86WB0 502 aaKnown RBP18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 SLC41A1Q8IVJ1 513 aa18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 SIKE1Q9BRV8 207 aa18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 MCMBPQ9BTE3 642 aa18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 KIFC1Q9BW19 673 aa18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 GLOD4Q9HC38 313 aa18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 STOML1Q9UBI4 398 aa18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 SLC7A8Q9UHI5 535 aa18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 AAR2Q9Y312 384 aaKnown RBP18.65■□□□□ 0.58
SHKBP1-201ENST00000291842 LOC100653049A0A140TA62 436 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 TNFRSF10BO14763 440 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 KRT34O76011 436 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 TM7SF2O76062 418 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 HLA-DQB2P05538 268 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 CHRNA4P43681 627 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 NUMBP49757 651 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 CDK7P50613 346 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 RAP1GDS1P52306 607 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 CSE1LP55060 971 aaKnown RBP18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 FRG1Q14331 258 aaKnown RBP18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 RALGPS1Q5JS13 557 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 SNX30Q5VWJ9 437 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 PDPK2PQ6A1A2 396 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 RIPOR1Q6ZS17 1223 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 OR6Y1Q8NGX8 325 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 MAPK15Q8TD08 544 aa18.64■□□□□ 0.58
SHKBP1-201ENST00000291842 TSGA13Q96PP4 275 aa18.64■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms