RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 RPS6KL1Q9Y6S9 549 aa15.6■□□□□ 0.09
SF3B4-201ENST00000271628 TRIM49D1C9J1S8 452 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 LPXNO60711 386 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 USP12O75317 370 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 USP1O94782 785 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 BAIAP3O94812 1187 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 CSF2RAP15509 400 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 RAG1P15918 1043 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 PPP3CCP48454 512 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 GEMP55040 296 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 TAF12Q16514 161 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 SH2D5Q6ZV89 423 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 DDX53Q86TM3 631 aaKnown RBP15.59■□□□□ 0.09
SF3B4-201ENST00000271628 TCP10LQ8TDR4 215 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 KLHL29Q96CT2 875 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 APOPT1Q96IL0 206 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 RPRD1AQ96P16 312 aaPredicted RBP15.59■□□□□ 0.09
SF3B4-201ENST00000271628 TRIM56Q9BRZ2 755 aaKnown RBP15.59■□□□□ 0.09
SF3B4-201ENST00000271628 ARHGEF3Q9NR81 526 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 GEMIN8Q9NWZ8 242 aaKnown RBP15.59■□□□□ 0.09
SF3B4-201ENST00000271628 TRPM5Q9NZQ8 1165 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 MAFFQ9ULX9 164 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 COL4A6Q14031 1691 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 ZNF840PA6NDX5 716 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 KIAA0355O15063 1070 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 URODP06132 367 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 MAPKAPK2P49137 400 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 HARS2P49590 506 aaKnown RBP15.59■□□□□ 0.09
SF3B4-201ENST00000271628 YBEYP58557 167 aaPredicted RBP15.59■□□□□ 0.09
SF3B4-201ENST00000271628 WDR5P61964 334 aaKnown RBP15.59■□□□□ 0.09
SF3B4-201ENST00000271628 DEFB103AP81534 67 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 MGAT5Q09328 741 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 NIPAL4Q0D2K0 466 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 RAB33AQ14088 237 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 VEPH1Q14D04 833 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 ZKSCAN8Q15776 578 aaPredicted RBP15.59■□□□□ 0.09
SF3B4-201ENST00000271628 PDK4Q16654 411 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 ALFQ53S48 1182 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 HECTD3Q5T447 861 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 CGB2Q6NT52 195 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 LVRNQ6Q4G3 990 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 TFAP2DQ7Z6R9 452 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 CHSY1Q86X52 802 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 GPR65Q8IYL9 337 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 NSMCE1Q8WV22 266 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 TRMT2BQ96GJ1 504 aaKnown RBP15.59■□□□□ 0.09
SF3B4-201ENST00000271628 SERAC1Q96JX3 654 aa15.59■□□□□ 0.09
SF3B4-201ENST00000271628 NOL6Q9H6R4 1146 aaKnown RBP15.59■□□□□ 0.09
SF3B4-201ENST00000271628 FAM237BA0A1B0GVD1 139 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 GOLGA8RI6L899 631 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 CNTN5O94779 1100 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 SEC24AO95486 1093 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 PYGBP11216 843 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 FOXN2P32314 431 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 ELF1P32519 619 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 PPM1AP35813 382 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 SLC1A5Q15758 541 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 PARP15Q460N3 678 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 FAM117BQ6P1L5 589 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 TIFABQ6ZNK6 161 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 ASRGL1Q7L266 308 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 OTOP3Q7RTS5 596 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 NECAB2Q7Z6G3 386 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 CCDC117Q8IWD4 279 aaPredicted RBP15.58■□□□□ 0.09
SF3B4-201ENST00000271628 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.58■□□□□ 0.09
SF3B4-201ENST00000271628 IGSF8Q969P0 613 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 CERS2Q96G23 380 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 MYCBPQ99417 103 aaPredicted RBP15.58■□□□□ 0.09
SF3B4-201ENST00000271628 IQCGQ9H095 443 aaKnown RBP15.58■□□□□ 0.09
SF3B4-201ENST00000271628 VPS11Q9H270 941 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 ENTPD7Q9NQZ7 604 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 UBP1Q9NZI7 540 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 ZFATQ9P243 1243 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 TXNDC16Q9P2K2 825 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 GGT7Q9UJ14 662 aa15.58■□□□□ 0.09
SF3B4-201ENST00000271628 NYNRINQ9P2P1 1898 aaKnown RBP15.58■□□□□ 0.08
SF3B4-201ENST00000271628 TRIM43BA6NCK2 446 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 F5H5T6 163 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 COPEO14579 308 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 ATP5HO75947 161 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 ALADP13716 330 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 HMGA1P17096 107 aaKnown RBP15.58■□□□□ 0.08
SF3B4-201ENST00000271628 ITGB8P26012 769 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 SLC11A2P49281 568 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 OLIG2Q13516 323 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 POLD3Q15054 466 aaPredicted RBP15.58■□□□□ 0.08
SF3B4-201ENST00000271628 C5orf22Q49AR2 442 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 MARC1Q5VT66 337 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 LRRC8CQ8TDW0 803 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 AZIN2Q96A70 460 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 TRIM43Q96BQ3 446 aaPredicted RBP15.58■□□□□ 0.08
SF3B4-201ENST00000271628 KLF6Q99612 283 aaPredicted RBP15.58■□□□□ 0.08
SF3B4-201ENST00000271628 TBL1YQ9BQ87 522 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.58■□□□□ 0.081e-7■□□□□ 10.1
SF3B4-201ENST00000271628 MCM8Q9UJA3 840 aa15.58■□□□□ 0.08
SF3B4-201ENST00000271628 MRPL42Q9Y6G3 142 aaKnown RBP15.58■□□□□ 0.08
SF3B4-201ENST00000271628 ACSL4O60488 711 aa15.57■□□□□ 0.08
SF3B4-201ENST00000271628 RAMP2O60895 175 aa15.57■□□□□ 0.08
SF3B4-201ENST00000271628 HLA-DQB2P05538 268 aa15.57■□□□□ 0.08
SF3B4-201ENST00000271628 TACR2P21452 398 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms