RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 NAB1Q13506 487 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 LRRC26Q2I0M4 334 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 SLC39A11Q8N1S5 342 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 DCLK2Q8N568 766 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 OVCA2Q8WZ82 227 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 TMPRSS4Q9NRS4 437 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 GKN1Q9NS71 199 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 KIAA1522Q9P206 1035 aaPredicted RBP11.79□□□□□ -0.52
VPS4A-201ENST00000254950 FIS1Q9Y3D6 152 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 A0A0G2JND7 137 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 MATN3O15232 486 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 SMIM24O75264 130 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 GLRA3O75311 464 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 BANF1O75531 89 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 GLP2RO95838 553 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 CES1P23141 567 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 CYP4F8P98187 520 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 KLF1Q13351 362 aaPredicted RBP11.79□□□□□ -0.52
VPS4A-201ENST00000254950 BMPR2Q13873 1038 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 HNRNPDQ14103 355 aaKnown RBP11.79□□□□□ -0.52
VPS4A-201ENST00000254950 PKDCCQ504Y2 493 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 PPP2R2DQ66LE6 453 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 LEMD2Q8NC56 503 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 SPATA17Q96L03 361 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 ACSS3Q9H6R3 686 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 PLK2Q9NYY3 685 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 UTRNP46939 3433 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 PLXNB2O15031 1838 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 A0A1W2PRU2 124 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 PTPN3P26045 913 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 NKX3-2P78367 333 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 IFI35P80217 286 aaPredicted RBP11.79□□□□□ -0.52
VPS4A-201ENST00000254950 MBTPS1Q14703 1052 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 FBXL22Q6P050 247 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 PQLC3Q8N755 202 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 ZMIZ2Q8NF64 920 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 TM6SF2Q9BZW4 377 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 SLC39A8Q9C0K1 460 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 GBA3Q9H227 469 aa11.79□□□□□ -0.52
VPS4A-201ENST00000254950 AGO1Q9UL18 857 aaKnown RBP11.79□□□□□ -0.52
VPS4A-201ENST00000254950 GOLGA8QA0A0J9YX86 632 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 GOLGA8OA6NCC3 632 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 GOLGA8NF8WBI6 632 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 STK25O00506 426 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 RHOBTB1O94844 696 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 RALBP11234 206 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 ITGALP20701 1170 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 SERPINA4P29622 427 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 SNRPD1P62314 119 aaKnown RBP11.78□□□□□ -0.52
VPS4A-201ENST00000254950 PAFAH1B3Q15102 231 aaKnown RBP11.78□□□□□ -0.52
VPS4A-201ENST00000254950 ADGRF1Q5T601 910 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 PM20D1Q6GTS8 502 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 BEND5Q7L4P6 421 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 CIR1Q86X95 450 aaPredicted RBP11.78□□□□□ -0.52
VPS4A-201ENST00000254950 PBXIP1Q96AQ6 731 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 CEP295NLQ96MC4 621 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 NMUR1Q9HB89 426 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 FNIP2Q9P278 1114 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 ZMYM5Q9UJ78 669 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 HS3ST4Q9Y661 456 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 ZFP37Q9Y6Q3 630 aaPredicted RBP11.78□□□□□ -0.52
VPS4A-201ENST00000254950 E2F8A0AVK6 867 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 AVILO75366 819 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 DGKIO75912 1065 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 HADHAP40939 763 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 CD151P48509 253 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 KCNQ1P51787 676 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 STX3Q13277 289 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 RAB33AQ14088 237 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 ANKRD22Q5VYY1 191 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 TXNDC8Q6A555 127 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 LRRC8BQ6P9F7 803 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 POTEHQ6S545 545 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 TRIM67Q6ZTA4 783 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 PTAR1Q7Z6K3 402 aaPredicted RBP11.78□□□□□ -0.52
VPS4A-201ENST00000254950 SLC43A3Q8NBI5 491 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 OR7D4Q8NG98 312 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 RAB3IL1Q8TBN0 382 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 HMCESQ96FZ2 354 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 EXOC2Q96KP1 924 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 FAM111AQ96PZ2 611 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 TRIM54Q9BYV2 358 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 PSD3Q9NYI0 1048 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 TEX28O15482 410 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 DNAJC6O75061 913 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 CIB2O75838 187 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 CHEK2O96017 543 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 STMN1P16949 149 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 CDK18Q07002 472 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 PPIDQ08752 370 aaKnown RBP11.78□□□□□ -0.52
VPS4A-201ENST00000254950 PREPLQ4J6C6 727 aaPredicted RBP11.78□□□□□ -0.52
VPS4A-201ENST00000254950 ZDHHC24Q6UX98 284 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 ARMC2Q8NEN0 867 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 CERS2Q96G23 380 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 TEKT5Q96M29 485 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 CCT8L2Q96SF2 557 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 CSNK1G1Q9HCP0 422 aa11.78□□□□□ -0.52
VPS4A-201ENST00000254950 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.78□□□□□ -0.52
VPS4A-201ENST00000254950 ZNFX1Q9P2E3 1918 aaKnown RBP11.78□□□□□ -0.52
VPS4A-201ENST00000254950 DOCK5Q9H7D0 1870 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms