RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 NT5DC4Q86YG4 428 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 EXT2Q93063 718 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 ACE2Q9BYF1 805 aaPredicted RBP21.7■■□□□ 1.06
TRIM28-201ENST00000253024 FLRT1Q9NZU1 646 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 MPP6Q9NZW5 540 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 BUD23O43709 281 aaKnown RBP21.7■■□□□ 1.06
TRIM28-201ENST00000253024 SERPINB8P50452 374 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 LIMK2P53671 638 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 LAYNQ6UX15 382 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 DHDDSQ86SQ9 333 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 GALNT4Q8N4A0 578 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 CDRT15Q96T59 188 aa21.7■■□□□ 1.06
TRIM28-201ENST00000253024 KLHL2O95198 593 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 AP2A1O95782 977 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 GLUD2P49448 558 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 FAM35AQ86V20 835 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 CNTD1Q8N815 330 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 RCN3Q96D15 328 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 COLEC11Q9BWP8 271 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 CDH19Q9H159 772 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 TSPYL2Q9H2G4 693 aaPredicted RBP21.69■■□□□ 1.06
TRIM28-201ENST00000253024 A0A0G2JMZ2 1700 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 LRRC37A2A6NM11 1700 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 NRCAMQ92823 1304 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 GSTA2P09210 222 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 MAXP61244 160 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 LSM12Q3MHD2 195 aaKnown RBP21.69■■□□□ 1.06
TRIM28-201ENST00000253024 NXNL1Q96CM4 212 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 HNRNPABQ99729 332 aaKnown RBP21.69■■□□□ 1.06
TRIM28-201ENST00000253024 NPAS2Q99743 824 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 BRD8Q9H0E9 1235 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 PAPOLBQ9NRJ5 636 aaKnown RBP21.69■■□□□ 1.06
TRIM28-201ENST00000253024 HACD1B0YJ81 288 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 GK3PQ14409 553 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 CNGA3Q16281 694 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 GRTP1Q5TC63 336 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 CEP97Q8IW35 865 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 SGIP1Q9BQI5 828 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 MKS1Q9NXB0 559 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 GTSE1Q9NYZ3 720 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 XPR1Q9UBH6 696 aa21.69■■□□□ 1.06
TRIM28-201ENST00000253024 RPL26L1Q9UNX3 145 aaKnown RBP21.69■■□□□ 1.06
TRIM28-201ENST00000253024 TRIM13O60858 407 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 IL1BP01584 269 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 OR4Q2P0C623 313 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 CNTFP26441 200 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 GABRB3P28472 473 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 DAOAP59103 153 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 PAOXQ6QHF9 649 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 OR6Y1Q8NGX8 325 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 FICDQ9BVA6 458 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 AHSGP02765 367 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 MLNP12872 115 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 NELFEP18615 380 aaKnown RBP21.68■■□□□ 1.06
TRIM28-201ENST00000253024 NME5P56597 212 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 ITKQ08881 620 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 GRIK3Q13003 919 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 FBXO48Q5FWF7 155 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 SPANXN3Q5MJ09 141 aa21.68■■□□□ 1.06
TRIM28-201ENST00000253024 C9JVG2 144 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 TFAP2DQ7Z6R9 452 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 TAC4Q86UU9 113 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 FSTL5Q8N475 847 aaPredicted RBP21.67■■□□□ 1.06
TRIM28-201ENST00000253024 PCDH20Q8N6Y1 951 aaKnown RBP21.67■■□□□ 1.06
TRIM28-201ENST00000253024 GATA6Q92908 595 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 PHF21BQ96EK2 531 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 ABHD16BQ9H3Z7 469 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 ATP6AP2A0A1C7CYW4 349 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 MAGEA13PA6NCF6 341 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 ATP6AP2O75787 350 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 OR6B1O95007 311 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 GRK2P25098 689 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 ZNF789Q5FWF6 425 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 C4orf22Q6V702 233 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 GPR152Q8TDT2 470 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 CMTM5Q96DZ9 223 aa21.67■■□□□ 1.06
TRIM28-201ENST00000253024 SPATS2LQ9NUQ6 558 aaKnown RBP21.67■■□□□ 1.06
TRIM28-201ENST00000253024 BRCA1P38398 1863 aaKnown RBP21.67■■□□□ 1.06
TRIM28-201ENST00000253024 B3GAT3O94766 335 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 XRCC1P18887 633 aaPredicted RBP21.66■■□□□ 1.06
TRIM28-201ENST00000253024 THOP1P52888 689 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 MMEL1Q495T6 779 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 TMC7Q7Z402 723 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 SLC45A3Q96JT2 553 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 COPS7BQ9H9Q2 264 aaPredicted RBP21.66■■□□□ 1.06
TRIM28-201ENST00000253024 PCDHB12Q9Y5F1 795 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 A0A1B0GVG6 124 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 F8W8V4 182 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 LIN7AO14910 233 aaPredicted RBP21.66■■□□□ 1.06
TRIM28-201ENST00000253024 PIK3R1P27986 724 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 MSLNQ13421 630 aaPredicted RBP21.66■■□□□ 1.06
TRIM28-201ENST00000253024 MFSD6LQ8IWD5 586 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 ACMSDQ8TDX5 336 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 ELMO2Q96JJ3 720 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 CSHL1Q14406 222 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 SLC30A9Q6PML9 568 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 TMLHEQ9NVH6 421 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 IGSF9Q9P2J2 1179 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 ARHGAP26Q9UNA1 814 aa21.66■■□□□ 1.06
TRIM28-201ENST00000253024 CHRM1P11229 460 aaPredicted RBP21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms