RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 NETO2Q8NC67 525 aa12.59□□□□□ -0.39
LINC00339-213ENST00000642137 SLC35B2Q8TB61 432 aa12.59□□□□□ -0.39
LINC00339-213ENST00000642137 TFB1MQ8WVM0 346 aaKnown RBP12.59□□□□□ -0.39
LINC00339-213ENST00000642137 FAM3CQ92520 227 aa12.59□□□□□ -0.39
LINC00339-213ENST00000642137 HAUS1Q96CS2 278 aa12.59□□□□□ -0.39
LINC00339-213ENST00000642137 SHDQ96IW2 340 aa12.59□□□□□ -0.39
LINC00339-213ENST00000642137 C2orf49Q9BVC5 232 aaPredicted RBP12.59□□□□□ -0.39
LINC00339-213ENST00000642137 FBRSL1Q9HCM7 1045 aaKnown RBP12.59□□□□□ -0.39
LINC00339-213ENST00000642137 ELOVL2Q9NXB9 296 aa12.59□□□□□ -0.39
LINC00339-213ENST00000642137 IPO11Q9UI26 975 aaKnown RBP12.59□□□□□ -0.39
LINC00339-213ENST00000642137 R3HDM2Q9Y2K5 976 aaKnown RBP12.59□□□□□ -0.39
LINC00339-213ENST00000642137 STARD13Q9Y3M8 1113 aa12.59□□□□□ -0.39
LINC00339-213ENST00000642137 KIAA1549LQ6ZVL6 1849 aa12.59□□□□□ -0.39
LINC00339-213ENST00000642137 BCLAF3A2AJT9 711 aaKnown RBP12.58□□□□□ -0.4
LINC00339-213ENST00000642137 SHISA7A6NL88 538 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 H7C0C1 242 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 CCDC188H7C350 402 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 CBX4O00257 560 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 PDE2AO00408 941 aaPredicted RBP12.58□□□□□ -0.4
LINC00339-213ENST00000642137 MCF2LO15068 1137 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 MATN3O15232 486 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 LIASO43766 372 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 PRAMEF11O60813 436 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 MAP3K6O95382 1288 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 ASLP04424 464 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 RBP3P10745 1247 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 DRD1P21728 446 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 STIP1P31948 543 aaKnown RBP12.58□□□□□ -0.4
LINC00339-213ENST00000642137 ATP5OP48047 213 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 GEMIN4P57678 1058 aaKnown RBP12.58□□□□□ -0.4
LINC00339-213ENST00000642137 STARD6P59095 220 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 CKAP4Q07065 602 aaKnown RBP12.58□□□□□ -0.4
LINC00339-213ENST00000642137 PON2Q15165 354 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 FUT11Q495W5 492 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 INO80DQ53TQ3 878 aaPredicted RBP12.58□□□□□ -0.4
LINC00339-213ENST00000642137 RETSATQ6NUM9 610 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 TXNDC11Q6PKC3 985 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 ZNF852Q6ZMS4 543 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 ZNF572Q7Z3I7 529 aaPredicted RBP12.58□□□□□ -0.4
LINC00339-213ENST00000642137 METTL3Q86U44 580 aaKnown RBP12.58□□□□□ -0.4
LINC00339-213ENST00000642137 ZC3H18Q86VM9 953 aaKnown RBP12.58□□□□□ -0.4
LINC00339-213ENST00000642137 CCDC13Q8IYE1 715 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 ATPAF2Q8N5M1 289 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 PRELID2Q8N945 189 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 C12orf50Q8NA57 414 aaPredicted RBP12.58□□□□□ -0.4
LINC00339-213ENST00000642137 CCNYQ8ND76 341 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 KCNV2Q8TDN2 545 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 UCMAQ8WVF2 138 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 C1orf54Q8WWF1 131 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 CASKIN2Q8WXE0 1202 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 NKD2Q969F2 451 aaPredicted RBP12.58□□□□□ -0.4
LINC00339-213ENST00000642137 ZNF599Q96NL3 588 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 AP1M1Q9BXS5 423 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 SMARCAL1Q9NZC9 954 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 NYNRINQ9P2P1 1898 aaKnown RBP12.58□□□□□ -0.4
LINC00339-213ENST00000642137 MRFAP1Q9Y605 127 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 C5orf42Q9H799 3197 aa12.58□□□□□ -0.4
LINC00339-213ENST00000642137 COL4A3Q01955 1670 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 GOLGA6L10A0A0M3HER8 536 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 PRRT4C9JH25 899 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 J3KR12 359 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 K7EQS6 105 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 MTSS1O43312 755 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 SNAP91O60641 907 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 CD160O95971 181 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 SRPRAP08240 638 aaKnown RBP12.57□□□□□ -0.4
LINC00339-213ENST00000642137 DLDP09622 509 aaKnown RBP12.57□□□□□ -0.4
LINC00339-213ENST00000642137 ARF5P84085 180 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 ZXDAP98168 799 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 ECT2LQ008S8 904 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 KDSRQ06136 332 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 MESP2Q0VG99 397 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 AP1B1Q10567 949 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 GRSF1Q12849 480 aaKnown RBP eCLIP12.57□□□□□ -0.4
LINC00339-213ENST00000642137 BYSLQ13895 437 aaKnown RBP12.57□□□□□ -0.4
LINC00339-213ENST00000642137 HNRNPDQ14103 355 aaKnown RBP12.57□□□□□ -0.4
LINC00339-213ENST00000642137 RFTN1Q14699 578 aaPredicted RBP12.57□□□□□ -0.4
LINC00339-213ENST00000642137 PRKD1Q15139 912 aaPredicted RBP12.57□□□□□ -0.4
LINC00339-213ENST00000642137 OASLQ15646 514 aaKnown RBP12.57□□□□□ -0.4
LINC00339-213ENST00000642137 SLC45A4Q5BKX6 768 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 TMCO4Q5TGY1 634 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 NAIF1Q69YI7 327 aaPredicted RBP12.57□□□□□ -0.4
LINC00339-213ENST00000642137 DARS2Q6PI48 645 aaKnown RBP12.57□□□□□ -0.4
LINC00339-213ENST00000642137 ARHGAP36Q6ZRI8 547 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 TPRG1Q6ZUI0 275 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 CCDC33Q8N5R6 958 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 KDM1BQ8NB78 822 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 ATL2Q8NHH9 583 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 CCDC26Q8TAB7 109 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 NSMCE1Q8WV22 266 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 MAGOHBQ96A72 148 aaKnown RBP12.57□□□□□ -0.4
LINC00339-213ENST00000642137 NELL2Q99435 816 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 LGMNQ99538 433 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 FERMT1Q9BQL6 677 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 SP110Q9HB58 689 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 PDFQ9HBH1 243 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 ARHGEF3Q9NR81 526 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 FEZ2Q9UHY8 353 aaPredicted RBP12.57□□□□□ -0.4
LINC00339-213ENST00000642137 VPS51Q9UID3 782 aa12.57□□□□□ -0.4
LINC00339-213ENST00000642137 MUTYHQ9UIF7 546 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms