RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 TFEBP19484 476 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 TFE3P19532 575 aaPredicted RBP14.37□□□□□ -0.11
LDB3-209ENST00000623056 SPRP35270 261 aaPredicted RBP14.37□□□□□ -0.11
LDB3-209ENST00000623056 LIMK2P53671 638 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 PFKPQ01813 784 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 NSUN2Q08J23 767 aaKnown RBP eCLIP14.37□□□□□ -0.11
LDB3-209ENST00000623056 ITGA7Q13683 1181 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 ARL13AQ5H913 290 aaPredicted RBP14.37□□□□□ -0.11
LDB3-209ENST00000623056 MAP1SQ66K74 1059 aaPredicted RBP14.37□□□□□ -0.11
LDB3-209ENST00000623056 OLFML1Q6UWY5 402 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 NCCRP1Q6ZVX7 275 aaPredicted RBP14.37□□□□□ -0.11
LDB3-209ENST00000623056 C1orf127Q8N9H9 656 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 SLC7A14Q8TBB6 771 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 SLC16A10Q8TF71 515 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 ATG4CQ96DT6 458 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 FCRL3Q96P31 734 aaPredicted RBP14.37□□□□□ -0.11
LDB3-209ENST00000623056 CIB1Q99828 191 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 DCUN1D5Q9BTE7 237 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 DRC3Q9H069 523 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 PCDHAC1Q9H158 963 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 PFDN4Q9NQP4 134 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 ANLNQ9NQW6 1124 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 EIF2B3Q9NR50 452 aaKnown RBP14.37□□□□□ -0.11
LDB3-209ENST00000623056 SLC8A2Q9UPR5 921 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 CLEC11AQ9Y240 323 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 SNX13Q9Y5W8 968 aa14.37□□□□□ -0.11
LDB3-209ENST00000623056 COPG1Q9Y678 874 aaKnown RBP14.37□□□□□ -0.11
LDB3-209ENST00000623056 HTRA2O43464 458 aaPredicted RBP14.36□□□□□ -0.11
LDB3-209ENST00000623056 FOXD2O60548 495 aaPredicted RBP14.36□□□□□ -0.11
LDB3-209ENST00000623056 PFKMP08237 780 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 RPL10P27635 214 aaKnown RBP14.36□□□□□ -0.11
LDB3-209ENST00000623056 GRIA4P48058 902 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 CCR3P51677 355 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 SLC5A3P53794 718 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 MPP3Q13368 585 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 TRIM25Q14258 630 aaKnown RBP14.36□□□□□ -0.11
LDB3-209ENST00000623056 DPYSL2Q16555 572 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 SLCO4A1Q96BD0 722 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 VPS50Q96JG6 964 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 LGMNQ99538 433 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 ANKRD60Q9BZ19 345 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 SUCOQ9UBS9 1254 aaKnown RBP14.36□□□□□ -0.11
LDB3-209ENST00000623056 HESX1Q9UBX0 185 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 ZDHHC2Q9UIJ5 367 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 TSPAN16Q9UKR8 245 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 BARX2Q9UMQ3 279 aaPredicted RBP14.36□□□□□ -0.11
LDB3-209ENST00000623056 SCAF8Q9UPN6 1271 aaKnown RBP14.36□□□□□ -0.11
LDB3-209ENST00000623056 C2P06681 752 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 NFICP08651 508 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 CXCL8P10145 99 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 ANK1P16157 1881 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 FUT4P22083 530 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 GTF2A2P52657 109 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 PSME3P61289 254 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 ESRRGP62508 458 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 RHDQ02161 417 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 TARBP2Q15633 366 aaKnown RBP14.36□□□□□ -0.11
LDB3-209ENST00000623056 ZBED5Q49AG3 693 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 SPANXN3Q5MJ09 141 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 NCBP2-AS2Q69YL0 99 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 SRCAPQ6ZRS2 3230 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 ANKRD23Q86SG2 305 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 CDR2LQ86X02 465 aaPredicted RBP14.36□□□□□ -0.11
LDB3-209ENST00000623056 PCDH20Q8N6Y1 951 aaKnown RBP14.36□□□□□ -0.11
LDB3-209ENST00000623056 URGCPQ8TCY9 931 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 KHSRPQ92945 711 aaKnown RBP eCLIP14.36□□□□□ -0.11
LDB3-209ENST00000623056 CSPG4P5Q96PW8 444 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 AGAP2Q99490 1192 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 CEP41Q9BYV8 373 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 RPAP3Q9H6T3 665 aaPredicted RBP14.36□□□□□ -0.11
LDB3-209ENST00000623056 IPO11Q9UI26 975 aaKnown RBP14.36□□□□□ -0.11
LDB3-209ENST00000623056 PCDHGA7Q9Y5G6 932 aa14.36□□□□□ -0.11
LDB3-209ENST00000623056 FAM155AB1AL88 458 aaPredicted RBP14.35□□□□□ -0.11
LDB3-209ENST00000623056 TK2O00142 265 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 PSMD12O00232 456 aaPredicted RBP14.35□□□□□ -0.11
LDB3-209ENST00000623056 ITGB3P05106 788 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 IDO1P14902 403 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 PSMD7P51665 324 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 HK2P52789 917 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 ATXN1P54253 815 aaKnown RBP14.35□□□□□ -0.11
LDB3-209ENST00000623056 PRKAA1Q13131 559 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 KIZQ2M2Z5 673 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 HMBOX1Q6NT76 420 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 LCLAT1Q6UWP7 414 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 MPZL3Q6UWV2 235 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 HERC6Q8IVU3 1022 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 TMEM192Q8IY95 271 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 FAM47BQ8NA70 645 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 COX4I2Q96KJ9 171 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 GMLQ99445 158 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 ACE2Q9BYF1 805 aaPredicted RBP14.35□□□□□ -0.11
LDB3-209ENST00000623056 TBC1D23Q9NUY8 699 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 DUS2Q9NX74 493 aaKnown RBP14.35□□□□□ -0.11
LDB3-209ENST00000623056 VTI1BQ9UEU0 232 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 CDH7Q9ULB5 785 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 E7ENX8 843 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 TMX2-CTNND1H3BSU7 103 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 ZNF701M0R085 212 aaPredicted RBP14.35□□□□□ -0.11
LDB3-209ENST00000623056 RNF103O00237 685 aa14.35□□□□□ -0.11
LDB3-209ENST00000623056 MCF2P10911 925 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms