RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 RANBP17Q9H2T7 1088 aaKnown RBP4.84□□□□□ -1.63
LINC00540-201ENST00000611481 ARMT1Q9H993 441 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 MLXIPQ9HAP2 919 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 RGS18Q9NS28 235 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 C1orf112Q9NSG2 853 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 FOXJ2Q9P0K8 574 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 SLC17A6Q9P2U8 582 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 HEMK1Q9Y5R4 338 aaPredicted RBP4.84□□□□□ -1.63
LINC00540-201ENST00000611481 SQORQ9Y6N5 450 aa4.84□□□□□ -1.63
LINC00540-201ENST00000611481 USP9YO00507 2555 aaPredicted RBP4.84□□□□□ -1.64
LINC00540-201ENST00000611481 ATG2BQ96BY7 2078 aa4.84□□□□□ -1.64
LINC00540-201ENST00000611481 KAT6AQ92794 2004 aa4.84□□□□□ -1.64
LINC00540-201ENST00000611481 MUC22E2RYF6 1773 aaPredicted RBP4.83□□□□□ -1.64
LINC00540-201ENST00000611481 ZFHX3Q15911 3703 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 FRMPD4Q14CM0 1322 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 ANO9A1A5B4 782 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF891A8MT65 544 aaPredicted RBP4.83□□□□□ -1.64
LINC00540-201ENST00000611481 MGST3O14880 152 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 EXTL3O43909 919 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 AKAP3O75969 853 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 GLUD1P00367 558 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 UBA1P22314 1058 aaKnown RBP4.83□□□□□ -1.64
LINC00540-201ENST00000611481 ELAVL4P26378 380 aaKnown RBP4.83□□□□□ -1.64
LINC00540-201ENST00000611481 CRHR1P34998 444 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 SLC16A2P36021 539 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF81P51508 661 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 NTHL1P78549 312 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 SRSF4Q08170 494 aaKnown RBP4.83□□□□□ -1.64
LINC00540-201ENST00000611481 LMAN2Q12907 356 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 PPFIA1Q13136 1202 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 TRIP6Q15654 476 aaKnown RBP4.83□□□□□ -1.64
LINC00540-201ENST00000611481 B3GNTL1Q67FW5 361 aaPredicted RBP4.83□□□□□ -1.64
LINC00540-201ENST00000611481 LHFPL2Q6ZUX7 228 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 C1QL2Q7Z5L3 287 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 GRASPQ7Z6J2 395 aaPredicted RBP4.83□□□□□ -1.64
LINC00540-201ENST00000611481 LYSMD2Q8IV50 215 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 ENAHQ8N8S7 591 aaPredicted RBP4.83□□□□□ -1.64
LINC00540-201ENST00000611481 TEX19Q8NA77 164 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 SLC35B2Q8TB61 432 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 NSUN6Q8TEA1 469 aaKnown RBP4.83□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF480Q8WV37 535 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 DNASE1L2Q92874 299 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 WBP1Q96G27 269 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 BOD1Q96IK1 185 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 PDLIM2Q96JY6 352 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 CAMK1GQ96NX5 476 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 C1QTNF7Q9BXJ2 289 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 PLA2G2FQ9BZM2 168 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 KLK15Q9H2R5 256 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 ZHX3Q9H4I2 956 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 BRD9Q9H8M2 597 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 GALNT9Q9HCQ5 603 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 PTPRHQ9HD43 1115 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 MTMR4Q9NYA4 1195 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 DPP7Q9UHL4 492 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 KCNG1Q9UIX4 513 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 TUBE1Q9UJT0 475 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 TRHDEQ9UKU6 1024 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF215Q9UL58 517 aaPredicted RBP4.83□□□□□ -1.64
LINC00540-201ENST00000611481 GINS2Q9Y248 185 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 PIAS3Q9Y6X2 628 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 ARHGEF17Q96PE2 2063 aaPredicted RBP4.83□□□□□ -1.64
LINC00540-201ENST00000611481 NUP205Q92621 2012 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 DOCK6Q96HP0 2047 aa4.83□□□□□ -1.64
LINC00540-201ENST00000611481 SPTBN1Q01082 2364 aaKnown RBP4.83□□□□□ -1.64
LINC00540-201ENST00000611481 IGKV6D-41A0A0C4DH26 115 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 VSTM5A8MXK1 200 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 GABRDO14764 452 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 RRP8O43159 456 aaKnown RBP4.82□□□□□ -1.64
LINC00540-201ENST00000611481 PLA2G6O60733 806 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 ZC3H11AO75152 810 aaKnown RBP eCLIP4.82□□□□□ -1.64
LINC00540-201ENST00000611481 TCEA3O75764 348 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 ENGP17813 658 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 CCNE1P24864 410 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 CTSSP25774 331 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 NEK4P51957 841 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 AK2P54819 239 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 MANFP55145 182 aaKnown RBP4.82□□□□□ -1.64
LINC00540-201ENST00000611481 SP2Q02086 613 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 MAPK7Q13164 816 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 G3BP1Q13283 466 aaKnown RBP eCLIP4.82□□□□□ -1.64
LINC00540-201ENST00000611481 HNRNPDQ14103 355 aaKnown RBP4.82□□□□□ -1.64
LINC00540-201ENST00000611481 MINDY4Q4G0A6 757 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 CLLU1OSQ5K130 101 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 SLC9C2Q5TAH2 1124 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 ARHGEF16Q5VV41 709 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 CCDC70Q6NSX1 233 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 ERAP2Q6P179 960 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 FRMD7Q6ZUT3 714 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 MED25Q71SY5 747 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 SLC41A1Q8IVJ1 513 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 SH2D3CQ8N5H7 860 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 CNTD1Q8N815 330 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 ITFG1Q8TB96 612 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 ACTRT2Q8TDY3 377 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 PIGKQ92643 395 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 RNF31Q96EP0 1072 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 IGSF21Q96ID5 467 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 STRBPQ96SI9 672 aaKnown RBP4.82□□□□□ -1.64
LINC00540-201ENST00000611481 IWS1Q96ST2 819 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms