RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 TXNDC8Q6A555 127 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 KLF16Q9BXK1 252 aaPredicted RBP11.97□□□□□ -0.49
VRK3-223ENST00000601341 PITPNM3Q9BZ71 974 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 PRO3102Q9H379 93 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 VPS37BQ9H9H4 285 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 ETNK2Q9NVF9 386 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 TBK1Q9UHD2 729 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 XPO7Q9UIA9 1087 aaKnown RBP11.97□□□□□ -0.49
VRK3-223ENST00000601341 RABGEF1Q9UJ41 708 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 SNX10Q9Y5X0 201 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 CLUHO75153 1309 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 CCDC195A0A1B0GUA6 201 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 E9PAM4 449 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 DCLK1O15075 740 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 FGF10O15520 208 aaPredicted RBP11.97□□□□□ -0.49
VRK3-223ENST00000601341 IFNB1P01574 187 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 RHOP08100 348 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 RBP3P10745 1247 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 CCNB1P14635 433 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 HOXC13P31276 330 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 GBP2P32456 591 aaPredicted RBP11.97□□□□□ -0.49
VRK3-223ENST00000601341 RPL22P35268 128 aaKnown RBP11.97□□□□□ -0.49
VRK3-223ENST00000601341 MAGEA6P43360 314 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 ELF3P78545 371 aaPredicted RBP11.97□□□□□ -0.49
VRK3-223ENST00000601341 CYP4F8P98187 520 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 MS4A13Q5J8X5 152 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 MANEALQ5VSG8 457 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 RWDD4Q6NW29 188 aaKnown RBP11.97□□□□□ -0.49
VRK3-223ENST00000601341 NPNTQ6UXI9 565 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 ARL14EPQ8N8R7 260 aaPredicted RBP11.97□□□□□ -0.49
VRK3-223ENST00000601341 MGARPQ8TDB4 240 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 AZIN2Q96A70 460 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 TBC1D31Q96DN5 1066 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 CYP2S1Q96SQ9 504 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 CATSPERBQ9H7T0 1116 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 GKN1Q9NS71 199 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 ABCF3Q9NUQ8 709 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 HCFC1R1Q9NWW0 138 aa11.97□□□□□ -0.49
VRK3-223ENST00000601341 DNMT3BQ9UBC3 853 aaKnown RBP11.97□□□□□ -0.49
VRK3-223ENST00000601341 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.97□□□□□ -0.49
VRK3-223ENST00000601341 TRAV19A0A0A6YYK7 116 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 SOBPA7XYQ1 873 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 RFXAPO00287 272 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 STC2O76061 302 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 UBOX5O94941 541 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 CKMP06732 381 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 GSTA2P09210 222 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 ETS1P14921 441 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 DDX6P26196 483 aaKnown RBP eCLIP11.96□□□□□ -0.49
VRK3-223ENST00000601341 ALDH3A1P30838 453 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 SERPINB6P35237 376 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 GPX6P59796 221 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 GBE1Q04446 702 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 FASTKD3Q14CZ7 662 aaKnown RBP11.96□□□□□ -0.49
VRK3-223ENST00000601341 PAFAH1B3Q15102 231 aaKnown RBP11.96□□□□□ -0.49
VRK3-223ENST00000601341 ARHGAP15Q53QZ3 475 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 ZNF697Q5TEC3 545 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 DARS2Q6PI48 645 aaKnown RBP11.96□□□□□ -0.49
VRK3-223ENST00000601341 MAB21L3Q8N8X9 362 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 FBF1Q8TES7 1133 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 LRRC39Q96DD0 335 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 CYTH2Q99418 400 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 VPS11Q9H270 941 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 DZANK1Q9NVP4 752 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 DONSONQ9NYP3 566 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 DTLQ9NZJ0 730 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 PAK5Q9P286 719 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 PPARGC1AQ9UBK2 798 aaKnown RBP11.96□□□□□ -0.49
VRK3-223ENST00000601341 RAD54BQ9Y620 910 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 USH1CQ9Y6N9 552 aa11.96□□□□□ -0.49
VRK3-223ENST00000601341 POC1B-GALNT4F8VUJ3 575 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 H7C0C1 242 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 ZNF197O14709 1029 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 NCAM2O15394 837 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 ACSL4O60488 711 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 HNRNPCL1O60812 293 aaKnown RBP11.95□□□□□ -0.5
VRK3-223ENST00000601341 EDF1O60869 148 aaKnown RBP11.95□□□□□ -0.5
VRK3-223ENST00000601341 DCTN3O75935 186 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 CORO1AP31146 461 aaKnown RBP11.95□□□□□ -0.5
VRK3-223ENST00000601341 CCR2P41597 374 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 ATP5OP48047 213 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 GTF2A1P52655 376 aaPredicted RBP11.95□□□□□ -0.5
VRK3-223ENST00000601341 SLC7A9P82251 487 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 PPARDQ03181 441 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 SLC10A2Q12908 348 aaPredicted RBP11.95□□□□□ -0.5
VRK3-223ENST00000601341 KCNC3Q14003 757 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 SETDB1Q15047 1291 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 WLSQ5T9L3 541 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 RAP1GAP2Q684P5 730 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 C3orf62Q6ZUJ4 267 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 ASRGL1Q7L266 308 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 C14orf80Q86SX3 495 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 ZC3H18Q86VM9 953 aaKnown RBP11.95□□□□□ -0.5
VRK3-223ENST00000601341 DENND1CQ8IV53 801 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 LZTR1Q8N653 840 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 GDAP1Q8TB36 358 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 SHKBP1Q8TBC3 707 aa11.95□□□□□ -0.5
VRK3-223ENST00000601341 ZNF707Q96C28 371 aaPredicted RBP11.95□□□□□ -0.5
VRK3-223ENST00000601341 ZFRQ96KR1 1074 aaKnown RBP11.95□□□□□ -0.5
VRK3-223ENST00000601341 SLC22A12Q96S37 553 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms