RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 HLTFQ14527 1009 aaKnown RBP eCLIP15.79■□□□□ 0.12
UPF1-206ENST00000598471 EML3Q32P44 896 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 ITPRIPL1Q6GPH6 555 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 CXorf57Q6NSI4 855 aaKnown RBP15.79■□□□□ 0.12
UPF1-206ENST00000598471 VITQ6UXI7 678 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 PCGF5Q86SE9 256 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 ADGRG2Q8IZP9 1017 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 BBS5Q8N3I7 341 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 EIF1ADQ8N9N8 165 aaKnown RBP15.79■□□□□ 0.12
UPF1-206ENST00000598471 LRRN4Q8WUT4 740 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 SEC14L1Q92503 715 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 ZNF599Q96NL3 588 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 LRRC3BQ96PB8 259 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 XPO6Q96QU8 1125 aaKnown RBP15.79■□□□□ 0.12
UPF1-206ENST00000598471 PARD6BQ9BYG5 372 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 SLC2A11Q9BYW1 496 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 EPC1Q9H2F5 836 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 PLK2Q9NYY3 685 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 WHRNQ9P202 907 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 VPS28Q9UK41 221 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 SNX24Q9Y343 169 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 COL6A3P12111 3177 aa15.79■□□□□ 0.12
UPF1-206ENST00000598471 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.78■□□□□ 0.12
UPF1-206ENST00000598471 ESYT3A0FGR9 886 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 KCNK1O00180 336 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 HOXC11O43248 304 aaPredicted RBP15.78■□□□□ 0.12
UPF1-206ENST00000598471 KDELR3O43731 214 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 PRAMEF11O60813 436 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 CYP17A1P05093 508 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 ZSCAN5DPP0CG00 497 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 ADH5P11766 374 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 CCNB1P14635 433 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 TYRP14679 529 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 ETS1P14921 441 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 PSMC3P17980 439 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 ITIH2P19823 946 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 PTPN3P26045 913 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 RPL21P46778 160 aaKnown RBP15.78■□□□□ 0.12
UPF1-206ENST00000598471 RENBPP51606 427 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 CAV1Q03135 178 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 FCHO2Q0JRZ9 810 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 NR1H3Q13133 447 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 DHCR24Q15392 516 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 ANKRD20A2Q5SQ80 823 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 TMCO4Q5TGY1 634 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 ANKRD20A1Q5TYW2 823 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 ANKRD20A3Q5VUR7 823 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 ARHGAP36Q6ZRI8 547 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 CPA6Q8N4T0 437 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 DCAF4L2Q8NA75 395 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 GLIS1Q8NBF1 620 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 OR7D4Q8NG98 312 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 CASKIN2Q8WXE0 1202 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 IFT81Q8WYA0 676 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 PNKPQ96T60 521 aa15.78■□□□□ 0.12
UPF1-206ENST00000598471 C2orf49Q9BVC5 232 aaPredicted RBP15.78■□□□□ 0.12
UPF1-206ENST00000598471 ACE2Q9BYF1 805 aaPredicted RBP15.78■□□□□ 0.12
UPF1-206ENST00000598471 ARGLU1Q9NWB6 273 aaPredicted RBP15.78■□□□□ 0.12
UPF1-206ENST00000598471 EYSQ5T1H1 3165 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 A0A0D9SEW6 157 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 GRXCR2A6NFK2 248 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 BHMG1C9JSJ3 638 aaPredicted RBP15.77■□□□□ 0.12
UPF1-206ENST00000598471 SMAPO00193 183 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 DNALI1O14645 258 aaPredicted RBP15.77■□□□□ 0.12
UPF1-206ENST00000598471 MBTPS2O43462 519 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 ERLIN1O75477 346 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 SEC31AO94979 1220 aaKnown RBP15.77■□□□□ 0.12
UPF1-206ENST00000598471 JCHAINP01591 159 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 FDFT1P37268 417 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 CSKP41240 450 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 GEMIN4P57678 1058 aaKnown RBP15.77■□□□□ 0.12
UPF1-206ENST00000598471 VSNL1P62760 191 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 WASHC5Q12768 1159 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 HNRNPDQ14103 355 aaKnown RBP15.77■□□□□ 0.12
UPF1-206ENST00000598471 MAP9Q49MG5 647 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 TEX44Q53QW1 395 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 IZUMO3Q5VZ72 239 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 RHBDF2Q6PJF5 856 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 PID1Q7Z2X4 250 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 CCDC110Q8TBZ0 833 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.77■□□□□ 0.12
UPF1-206ENST00000598471 MAML1Q92585 1016 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 PPP1R2P1Q96PQ5 205 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 IL12RB2Q99665 862 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 HINFPQ9BQA5 517 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 KXD1Q9BQD3 176 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 FAM83CQ9BQN1 747 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 FEM1AQ9BSK4 669 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 RAB6BQ9NRW1 208 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 UBA2Q9UBT2 640 aaPredicted RBP15.77■□□□□ 0.12
UPF1-206ENST00000598471 MTRF1LQ9UGC7 380 aaKnown RBP15.77■□□□□ 0.12
UPF1-206ENST00000598471 RAB21Q9UL25 225 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 TPX2Q9ULW0 747 aaKnown RBP15.77■□□□□ 0.12
UPF1-206ENST00000598471 FAM50BQ9Y247 325 aa15.77■□□□□ 0.12
UPF1-206ENST00000598471 GOLGA6CA6NDK9 693 aa15.76■□□□□ 0.11
UPF1-206ENST00000598471 GOLGA6BA6NDN3 693 aa15.76■□□□□ 0.11
UPF1-206ENST00000598471 J3KR12 359 aa15.76■□□□□ 0.11
UPF1-206ENST00000598471 CBX4O00257 560 aa15.76■□□□□ 0.11
UPF1-206ENST00000598471 CHADO15335 359 aa15.76■□□□□ 0.11
UPF1-206ENST00000598471 GOLGA6DP0CG33 693 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms