RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TLX3O43711 291 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-212ENST00000597995 RNGTTO60942 597 aaKnown RBP12.87□□□□□ -0.35
TRIM28-212ENST00000597995 LETM1O95202 739 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-212ENST00000597995 GLI1P08151 1106 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 VAV1P15498 845 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 ACP1P24666 158 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 ITPKBP27987 946 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 ERCC5P28715 1186 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-212ENST00000597995 MTIF2P46199 727 aaKnown RBP12.87□□□□□ -0.35
TRIM28-212ENST00000597995 CLDN6P56747 220 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 E2F1Q01094 437 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 ARHGAP44Q17R89 818 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 EXOC3L4Q17RC7 722 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 PROX2Q3B8N5 592 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 CXorf57Q6NSI4 855 aaKnown RBP12.87□□□□□ -0.35
TRIM28-212ENST00000597995 ENOSF1Q7L5Y1 443 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 WDTC1Q8N5D0 677 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 SHC3Q92529 594 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 FGF11Q92914 225 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 ALG14Q96F25 216 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 PREBQ9HCU5 417 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 SAMSN1Q9NSI8 373 aaKnown RBP12.87□□□□□ -0.35
TRIM28-212ENST00000597995 APEX2Q9UBZ4 518 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 SLC25A13Q9UJS0 675 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 MYLKQ15746 1914 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 NYNRINQ9P2P1 1898 aaKnown RBP12.87□□□□□ -0.35
TRIM28-212ENST00000597995 PTPRQQ9UMZ3 2332 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 C1QTNF3-AMACRE9PGA6 284 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 ATXN7O15265 892 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-212ENST00000597995 RTN2O75298 545 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 PNMA6AP0CW24 399 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-212ENST00000597995 GLDCP23378 1020 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 GNA15P30679 374 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 CCR1P32246 355 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 METAP1P53582 386 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 CDK17Q00537 523 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 KCNMA1Q12791 1236 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 ZNF211Q13398 564 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-212ENST00000597995 MAN2A1Q16706 1144 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 SETMARQ53H47 684 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-212ENST00000597995 AGBL4Q5VU57 503 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 FBXL22Q6P050 247 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 NEK5Q6P3R8 708 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 RBM43Q6ZSC3 357 aaKnown RBP12.86□□□□□ -0.35
TRIM28-212ENST00000597995 DCBLD1Q8N8Z6 715 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 SLC39A7Q92504 469 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 TUBGCP2Q9BSJ2 902 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 FEM1AQ9BSK4 669 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 NDST4Q9H3R1 872 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 ASNSD1Q9NWL6 643 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 SARDHQ9UL12 918 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 CLCA2Q9UQC9 943 aa12.86□□□□□ -0.35
TRIM28-212ENST00000597995 HELZ2Q9BYK8 2649 aaKnown RBP12.85□□□□□ -0.35
TRIM28-212ENST00000597995 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-212ENST00000597995 FOXN3O00409 490 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-212ENST00000597995 THAP12O43422 761 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 MAT2AP31153 395 aaKnown RBP12.85□□□□□ -0.35
TRIM28-212ENST00000597995 ACTN2P35609 894 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 PITX1P78337 314 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-212ENST00000597995 INSM1Q01101 510 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-212ENST00000597995 CCDC15Q0P6D6 951 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 CNTN1Q12860 1018 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 ZNF177Q13360 481 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-212ENST00000597995 PDCLQ13371 301 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 DLG2Q15700 870 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 TPD52L1Q16890 204 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-212ENST00000597995 ACCSLQ4AC99 568 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 VWA3BQ502W6 1294 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 EFHC1Q5JVL4 640 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 CIR1Q86X95 450 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-212ENST00000597995 KLHDC7BQ96G42 594 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 FAM81BQ96LP2 452 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 RPRD1AQ96P16 312 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-212ENST00000597995 SLC2A13Q96QE2 648 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 FAM204AQ9H8W3 233 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 KLHL11Q9NVR0 708 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 DDIT4Q9NX09 232 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 DNAJC12Q9UKB3 198 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 OR51B4Q9Y5P0 310 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 DOCK9Q9BZ29 2069 aa12.85□□□□□ -0.35
TRIM28-212ENST00000597995 SIGLEC6O43699 453 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 CLDN11O75508 207 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 ZNF18P17022 549 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 CLCN1P35523 988 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 USP8P40818 1118 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 AUHQ13825 339 aaKnown RBP12.84□□□□□ -0.35
TRIM28-212ENST00000597995 TAF5Q15542 800 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 C5orf22Q49AR2 442 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 SMYD5Q6GMV2 418 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 DEFB106AQ8N104 65 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 SLC25A45Q8N413 288 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 SH2D3CQ8N5H7 860 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 TMEM145Q8NBT3 493 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 RNF34Q969K3 372 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 FCRL3Q96P31 734 aaPredicted RBP12.84□□□□□ -0.35
TRIM28-212ENST00000597995 CPXM1Q96SM3 734 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 TBC1D30Q9Y2I9 924 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 FARP1Q9Y4F1 1045 aaPredicted RBP12.84□□□□□ -0.35
TRIM28-212ENST00000597995 RAI2Q9Y5P3 530 aa12.84□□□□□ -0.35
TRIM28-212ENST00000597995 TEX51A0A1B0GUA7 166 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms