RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ZMYM5Q9UJ78 669 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 AGO1Q9UL18 857 aaKnown RBP9.73□□□□□ -0.85
TRIM28-208ENST00000597172 PLXNB3Q9ULL4 1909 aa9.73□□□□□ -0.85
TRIM28-208ENST00000597172 OBSL1O75147 1896 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 TCRBV7S2A1N4TA0A589 114 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 LRRD1A4D1F6 860 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 CEP104O60308 925 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 ACSL4O60488 711 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 KRT38O76015 456 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 PRAMEF12O95522 483 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 APOEP02649 317 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 IRF1P10914 325 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 KRT10P13645 584 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 CORO1AP31146 461 aaKnown RBP9.72□□□□□ -0.85
TRIM28-208ENST00000597172 AVPR1AP37288 418 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 GGCXP38435 758 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 HCAR3P49019 387 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 HARS2P49590 506 aaKnown RBP9.72□□□□□ -0.85
TRIM28-208ENST00000597172 COPS2P61201 443 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 IRX4P78413 519 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 NRG1Q02297 640 aaPredicted RBP9.72□□□□□ -0.85
TRIM28-208ENST00000597172 AUHQ13825 339 aaKnown RBP9.72□□□□□ -0.85
TRIM28-208ENST00000597172 PDK2Q15119 407 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 FAM133BQ5BKY9 247 aaKnown RBP9.72□□□□□ -0.85
TRIM28-208ENST00000597172 ANKRD20A8PQ5CZ79 823 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 EFHC2Q5JST6 749 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 FAM78AQ5JUQ0 283 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 ZFYVE27Q5T4F4 411 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 MANEALQ5VSG8 457 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 PIP4P1Q86T03 277 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 DENND1CQ8IV53 801 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 PQLC3Q8N755 202 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 ATP6V0D2Q8N8Y2 350 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 ZSCAN18Q8TBC5 510 aaPredicted RBP9.72□□□□□ -0.85
TRIM28-208ENST00000597172 SH3RF2Q8TEC5 729 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 FAF2Q96CS3 445 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 HEMGNQ9BXL5 484 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 SLITRK6Q9H5Y7 841 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 TDP1Q9NUW8 608 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 SMARCAL1Q9NZC9 954 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 CFAP97Q9P2B7 532 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 SLC12A6Q9UHW9 1150 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 CDC23Q9UJX2 597 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 STOML2Q9UJZ1 356 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 TTC7AQ9ULT0 858 aaPredicted RBP9.72□□□□□ -0.85
TRIM28-208ENST00000597172 NEU3Q9UQ49 428 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 DENND4CQ5VZ89 1909 aa9.72□□□□□ -0.85
TRIM28-208ENST00000597172 hCG_1818297A0A087WSY0 165 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 A0A087WV48 116 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 DRGXA6NNA5 263 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 GFRA2O00451 464 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 SCAMP3O14828 347 aaKnown RBP9.71□□□□□ -0.86
TRIM28-208ENST00000597172 CREB3O43889 395 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 LRIG2O94898 1065 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 TCF3P15923 654 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 GOT1P17174 413 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 AMPD1P23109 780 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 GDI1P31150 447 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 SLC6A4P31645 630 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 PTPN7P35236 360 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 VIPR2P41587 438 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 CFHR1Q03591 330 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 DPYSQ14117 519 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 KRT81Q14533 505 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 ZNF77Q15935 545 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 PPP2R5EQ16537 467 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 C5orf22Q49AR2 442 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 PPP6R3Q5H9R7 873 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-208ENST00000597172 DNTTIP2Q5QJE6 756 aaKnown RBP9.71□□□□□ -0.86
TRIM28-208ENST00000597172 ADGRF1Q5T601 910 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 RAP1GAP2Q684P5 730 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 FBXL22Q6P050 247 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 VSIG1Q86XK7 387 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 SLC13A5Q86YT5 568 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-208ENST00000597172 MAP7D3Q8IWC1 876 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 FAM217AQ8IXS0 508 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 PCDH19Q8TAB3 1148 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 ACTRT1Q8TDG2 376 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 SMARCD2Q92925 531 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 IGSF8Q969P0 613 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 P2RY11Q96G91 374 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 RBM41Q96IZ5 413 aaKnown RBP9.71□□□□□ -0.86
TRIM28-208ENST00000597172 CAPZA3Q96KX2 299 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 ASB16Q96NS5 453 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 CSPG4P5Q96PW8 444 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 RNF157Q96PX1 679 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 CALN1Q9BXU9 219 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 OSBPL8Q9BZF1 889 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 DCLK3Q9C098 648 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 TRPV4Q9HBA0 871 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 ZFP14Q9HCL3 533 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 ETNK2Q9NVF9 386 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 EFR3BQ9Y2G0 817 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 MRFAP1Q9Y605 127 aa9.71□□□□□ -0.86
TRIM28-208ENST00000597172 EML5Q05BV3 1969 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 IGLV3-10A0A075B6K4 115 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 E2F8A0AVK6 867 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 UPK3BL1B0FP48 263 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 ZNF487B1APH4 448 aa9.7□□□□□ -0.86
TRIM28-208ENST00000597172 PATE3B3GLJ2 98 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms