RNA–Protein interactions for RNA: ENST00000583649.1

CASC3-208, Transcript of CASC3, exon junction complex subunit, human

TSL 3

Gene CASC3, Length 577 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CASC3-208	ENST00000583649	FBXO2	Q9UK22	296 aa	Predicted RBP	11.45	□□□□□ -0.58
CASC3-208	ENST00000583649	INTS6	Q9UL03	887 aa	Known RBP	11.45	□□□□□ -0.58
CASC3-208	ENST00000583649	DOLK	Q9UPQ8	538 aa		11.45	□□□□□ -0.58
CASC3-208	ENST00000583649	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.45	□□□□□ -0.58
CASC3-208	ENST00000583649		U3KQA8	63 aa		11.45	□□□□□ -0.58
CASC3-208	ENST00000583649	ARID1B	Q8NFD5	2236 aa	Predicted RBP	11.45	□□□□□ -0.58
CASC3-208	ENST00000583649	SPTY2D1-AS1	A0A0U1RR47	76 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	GOLGA6L7	A0A1B0GV03	622 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649		A0A1W2PQ27	194 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649		A0A1W2PQ64	194 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649		A0A1W2PQC6	194 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	FPGT	O14772	594 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	MCF2L	O15068	1137 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	MSI1	O43347	362 aa	Known RBP	11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	NOBOX	O60393	691 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	CTSO	P43234	321 aa	Predicted RBP	11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	POLE2	P56282	527 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	RIPPLY3	P57055	190 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	RPS24	P62847	133 aa	Known RBP	11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	ADIG	Q0VDE8	80 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	TGIF1	Q15583	401 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	ZNF284	Q2VY69	593 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	DEFB133	Q30KQ1	61 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	FAM133B	Q5BKY9	247 aa	Known RBP	11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	TTC39B	Q5VTQ0	682 aa	Predicted RBP	11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	ARHGAP17	Q68EM7	881 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	MSANTD2	Q6P1R3	559 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	KYAT3	Q6YP21	454 aa	Known RBP	11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	PDILT	Q8N807	584 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	ELMO3	Q96BJ8	720 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	SERPINB11	Q96P15	392 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	TRIM62	Q9BVG3	475 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	PISD	Q9UG56	409 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	SLC12A6	Q9UHW9	1150 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	PPM1H	Q9ULR3	514 aa		11.44	□□□□□ -0.58
CASC3-208	ENST00000583649	BOD1L1	Q8NFC6	3051 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	AGFG2	O95081	481 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	IGLV3-27	P01718	113 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	APOE	P02649	317 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	PRNP	P04156	253 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	KRT13	P13646	458 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	SLC6A4	P31645	630 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	VASP	P50552	380 aa	Predicted RBP	11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	RPS21	P63220	83 aa	Known RBP	11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	BST2	Q10589	180 aa	Known RBP	11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	SGCG	Q13326	291 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	CLCA4	Q14CN2	919 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	FSCB	Q5H9T9	825 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	MS4A13	Q5J8X5	152 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	KIAA1161	Q6NSJ0	714 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	CNNM4	Q6P4Q7	775 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	UNC13D	Q70J99	1090 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	SLC9A9	Q8IVB4	645 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	SCML4	Q8N228	414 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	IQUB	Q8NA54	791 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	GPBAR1	Q8TDU6	330 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	IRGQ	Q8WZA9	623 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	KLK6	Q92876	244 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	FEM1C	Q96JP0	617 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	TBATA	Q96M53	351 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	CLIC6	Q96NY7	704 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	BOC	Q9BWV1	1114 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	SLC13A1	Q9BZW2	595 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	B3GNT4	Q9C0J1	378 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	MAGEF1	Q9HAY2	307 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	FZD3	Q9NPG1	666 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	KBTBD4	Q9NVX7	518 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	PADI4	Q9UM07	663 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	CLIC4	Q9Y696	253 aa		11.43	□□□□□ -0.58
CASC3-208	ENST00000583649	YJEFN3	A6XGL0	299 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649		E7ENQ6	273 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649		F5H5T6	163 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	STMND1	H3BQB6	276 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	KPNA3	O00505	521 aa	Predicted RBP	11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	BNIP3L	O60238	219 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	SETSIP	P0DME0	302 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	CCKBR	P32239	447 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	RECQL	P46063	649 aa	Predicted RBP	11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	STK19	P49842	368 aa	Predicted RBP	11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	BLK	P51451	505 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	THOP1	P52888	689 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	CLDN2	P57739	230 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	YWHAE	P62258	255 aa	Known RBP	11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	NNT	Q13423	1086 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	PDE1C	Q14123	709 aa	Predicted RBP	11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	SEPT6	Q14141	434 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	FZD2	Q14332	565 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	DCAF6	Q58WW2	860 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	PERM1	Q5SV97	790 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	FHL5	Q5TD97	284 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	CEP135	Q66GS9	1140 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	GCNT7	Q6ZNI0	430 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	MMS22L	Q6ZRQ5	1243 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	VASH2	Q86V25	355 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	APCDD1	Q8J025	514 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	SLC22A18AS	Q8N1D0	253 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	CFAP52	Q8N1V2	620 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	C9orf43	Q8TAL5	461 aa	Predicted RBP	11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	TMEM174	Q8WUU8	243 aa		11.42	□□□□□ -0.58
CASC3-208	ENST00000583649	PRICKLE1	Q96MT3	831 aa	Predicted RBP	11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms