RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 METAP1P53582 386 aa20.61■□□□□ 0.89
SS18-218ENST00000581021 ARF5P84085 180 aa20.61■□□□□ 0.89
SS18-218ENST00000581021 SLC18A3Q16572 532 aa20.61■□□□□ 0.89
SS18-218ENST00000581021 ZNF776Q68DI1 518 aaPredicted RBP20.61■□□□□ 0.89
SS18-218ENST00000581021 ZNF783Q6ZMS7 281 aa20.61■□□□□ 0.89
SS18-218ENST00000581021 PRR23CQ6ZRP0 262 aa20.61■□□□□ 0.89
SS18-218ENST00000581021 Q6ZVU0 165 aa20.61■□□□□ 0.89
SS18-218ENST00000581021 FAM124AQ86V42 546 aa20.61■□□□□ 0.89
SS18-218ENST00000581021 CPNE8Q86YQ8 564 aa20.61■□□□□ 0.89
SS18-218ENST00000581021 C2orf49Q9BVC5 232 aaPredicted RBP20.61■□□□□ 0.89
SS18-218ENST00000581021 NUP85Q9BW27 656 aa20.61■□□□□ 0.89
SS18-218ENST00000581021 FBRSQ9HAH7 460 aa20.61■□□□□ 0.89
SS18-218ENST00000581021 MRPL47Q9HD33 250 aaKnown RBP20.61■□□□□ 0.89
SS18-218ENST00000581021 TMEM74BQ9NUR3 256 aa20.61■□□□□ 0.89
SS18-218ENST00000581021 SLC25A13Q9UJS0 675 aa20.61■□□□□ 0.89
SS18-218ENST00000581021 AP4E1Q9UPM8 1137 aa20.61■□□□□ 0.89
SS18-218ENST00000581021 NUP205Q92621 2012 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 SSU72P8A0A1W2PR75 194 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 TARSL2A2RTX5 802 aaKnown RBP20.6■□□□□ 0.89
SS18-218ENST00000581021 PATE3B3GLJ2 98 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 CREB3O43889 395 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 CD160O95971 181 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 MAPKAPK2P49137 400 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 ZNF75DP51815 510 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 AIF1P55008 147 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 DLG2Q15700 870 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 TXNRD3NBQ6F5E7 133 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 SLC36A4Q6YBV0 504 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 CYP2U1Q7Z449 544 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 MMAAQ8IVH4 418 aaKnown RBP20.6■□□□□ 0.89
SS18-218ENST00000581021 RTL3Q8N8U3 475 aaKnown RBP20.6■□□□□ 0.89
SS18-218ENST00000581021 TC2NQ8N9U0 490 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 KCTD15Q96SI1 283 aaPredicted RBP20.6■□□□□ 0.89
SS18-218ENST00000581021 SPON2Q9BUD6 331 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 ACE2Q9BYF1 805 aaPredicted RBP20.6■□□□□ 0.89
SS18-218ENST00000581021 PABPC3Q9H361 631 aaKnown RBP20.6■□□□□ 0.89
SS18-218ENST00000581021 SPTLC3Q9NUV7 552 aa20.6■□□□□ 0.89
SS18-218ENST00000581021 RNF103O00237 685 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 CBX4O00257 560 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 MID1O15344 667 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 ZNF821O75541 412 aaPredicted RBP20.59■□□□□ 0.89
SS18-218ENST00000581021 ZNF806P0C7X5 589 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 EPHB2P29323 1055 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 ACSL1P33121 698 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 PSMD8P48556 350 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 CST6Q15828 149 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 SPDYCQ5MJ68 293 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 LYSMD4Q5XG99 296 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 ARHGEF2Q92974 986 aaKnown RBP20.59■□□□□ 0.89
SS18-218ENST00000581021 HSPA12BQ96MM6 686 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 PPP1R9BQ96SB3 815 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 EPAS1Q99814 870 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 GPR174Q9BXC1 333 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 ATP13A1Q9HD20 1204 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 ANAPC7Q9UJX3 599 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 SARDHQ9UL12 918 aa20.59■□□□□ 0.89
SS18-218ENST00000581021 RALGAPA1Q6GYQ0 2036 aa20.58■□□□□ 0.89
SS18-218ENST00000581021 AKR1B15C9JRZ8 316 aaPredicted RBP20.58■□□□□ 0.89
SS18-218ENST00000581021 GDF9O60383 454 aa20.58■□□□□ 0.89
SS18-218ENST00000581021 ACADMP11310 421 aa20.58■□□□□ 0.89
SS18-218ENST00000581021 KRT83P78385 493 aa20.58■□□□□ 0.89
SS18-218ENST00000581021 ZBTB16Q05516 673 aa20.58■□□□□ 0.89
SS18-218ENST00000581021 ZNF33AQ06730 810 aa20.58■□□□□ 0.89
SS18-218ENST00000581021 ELAVL3Q14576 367 aaKnown RBP20.58■□□□□ 0.89
SS18-218ENST00000581021 ACCSLQ4AC99 568 aa20.58■□□□□ 0.89
SS18-218ENST00000581021 PEAR1Q5VY43 1037 aaPredicted RBP20.58■□□□□ 0.89
SS18-218ENST00000581021 AADATQ8N5Z0 425 aa20.58■□□□□ 0.89
SS18-218ENST00000581021 NIPA2Q8N8Q9 360 aa20.58■□□□□ 0.89
SS18-218ENST00000581021 PIGKQ92643 395 aa20.58■□□□□ 0.89
SS18-218ENST00000581021 ZNF419Q96HQ0 510 aaPredicted RBP20.58■□□□□ 0.89
SS18-218ENST00000581021 KLC2Q9H0B6 622 aa20.58■□□□□ 0.89
SS18-218ENST00000581021 DHX35Q9H5Z1 703 aaKnown RBP20.58■□□□□ 0.89
SS18-218ENST00000581021 NHEJ1Q9H9Q4 299 aaPredicted RBP20.58■□□□□ 0.89
SS18-218ENST00000581021 PILRBQ9UKJ0 227 aa20.58■□□□□ 0.89
SS18-218ENST00000581021 CEP192Q8TEP8 1941 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 WASH4PA8MWX3 477 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 PRPSAP2O60256 369 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 RAMP2O60895 175 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 RNF8O76064 485 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 DNTTP04053 509 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 CTSLP07711 333 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 TPM1P09493 284 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 PCK1P35558 622 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 NNMTP40261 264 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 SERPINH1P50454 418 aaKnown RBP20.57■□□□□ 0.88
SS18-218ENST00000581021 SLC25A11Q02978 314 aaKnown RBP20.57■□□□□ 0.88
SS18-218ENST00000581021 SMTNL2Q2TAL5 461 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 KCNT1Q5JUK3 1230 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 ERMARDQ5T6L9 678 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 C22orf39Q6P5X5 142 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 CNGA4Q8IV77 575 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 GPR161Q8N6U8 529 aaKnown RBP20.57■□□□□ 0.88
SS18-218ENST00000581021 ATP11CQ8NB49 1132 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 RMDN1Q96DB5 314 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 TNKS2Q9H2K2 1166 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 C6orf106Q9H6K1 298 aaPredicted RBP20.57■□□□□ 0.88
SS18-218ENST00000581021 RETREG1Q9H6L5 497 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 VPS45Q9NRW7 570 aa20.57■□□□□ 0.88
SS18-218ENST00000581021 ZNHIT6Q9NWK9 470 aaKnown RBP20.57■□□□□ 0.88
SS18-218ENST00000581021 SLCO1B1Q9Y6L6 691 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms