RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 GTPBP10A4D1E9 387 aaKnown RBP6.91□□□□□ -1.3
VPS53-213ENST00000572334 LRRC72A6NJI9 287 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 F5H5T6 163 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 TLR4O00206 839 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 FOXN3O00409 490 aaPredicted RBP6.91□□□□□ -1.3
VPS53-213ENST00000572334 ENC1O14682 589 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 CAPN9O14815 690 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 MED7O43513 233 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 PLRG1O43660 514 aaKnown RBP6.91□□□□□ -1.3
VPS53-213ENST00000572334 TLX3O43711 291 aaPredicted RBP6.91□□□□□ -1.3
VPS53-213ENST00000572334 DFNA5O60443 496 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 RNASEH1O60930 286 aaKnown RBP6.91□□□□□ -1.3
VPS53-213ENST00000572334 PAGE1O75459 146 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 ZNF821O75541 412 aaPredicted RBP6.91□□□□□ -1.3
VPS53-213ENST00000572334 ADCY5O95622 1261 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 IL1BP01584 269 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 GIMD1P0DJR0 217 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 SRCP12931 536 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 CCR1P32246 355 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 CNTN1Q12860 1018 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 ALFQ53S48 1182 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 PIP5KL1Q5T9C9 394 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 TRNP1Q6NT89 227 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 FBXL19Q6PCT2 694 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.91□□□□□ -1.3
VPS53-213ENST00000572334 ENOSF1Q7L5Y1 443 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 SLC26A9Q7LBE3 791 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 BNIPLQ7Z465 357 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 ADAT2Q7Z6V5 191 aaKnown RBP6.91□□□□□ -1.3
VPS53-213ENST00000572334 SLC47A2Q86VL8 602 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 GALNT15Q8N3T1 639 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 SH2D3CQ8N5H7 860 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 MFSD2AQ8NA29 543 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 C1orf131Q8NDD1 294 aaKnown RBP6.91□□□□□ -1.3
VPS53-213ENST00000572334 ZNF397Q8NF99 534 aaPredicted RBP6.91□□□□□ -1.3
VPS53-213ENST00000572334 OR14C36Q8NHC7 312 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 GANCQ8TET4 914 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 HNRNPLLQ8WVV9 542 aaKnown RBP6.91□□□□□ -1.3
VPS53-213ENST00000572334 SERAC1Q96JX3 654 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 PPP1R13BQ96KQ4 1090 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 SPAG5Q96R06 1193 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 NPY6RQ99463 290 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 OMDQ99983 421 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 FAM204AQ9H8W3 233 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 ERVMER34-1Q9H9K5 563 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 SCUBE2Q9NQ36 999 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 PLCB1Q9NQ66 1216 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 TMPRSS4Q9NRS4 437 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 PIGVQ9NUD9 493 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 ARHGEF38Q9NXL2 777 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 COX16Q9P0S2 106 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 KIAA1468Q9P260 1216 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 FTSJ1Q9UET6 329 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 RWDD2AQ9UIY3 292 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 VANGL2Q9ULK5 521 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 HS3ST2Q9Y278 367 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 CA5BQ9Y2D0 317 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 TBC1D30Q9Y2I9 924 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 PCDHGA1Q9Y5H4 931 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 KALRNO60229 2985 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 COL6A6A6NMZ7 2263 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 BSNQ9UPA5 3926 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 ARHGEF17Q96PE2 2063 aaPredicted RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 TBC1D3DA0A087WVF3 549 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 TBC1D3IA0A087WXS9 549 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 TBC1D3EA0A087X179 549 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 TBC1D3KA0A087X1G2 549 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 TBC1D3FA6NER0 549 aaPredicted RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 DRGXA6NNA5 263 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 TBC1D3LB9A6J9 549 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 K7ERQ8 282 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 MCF2LO15068 1137 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 SLC7A4O43246 635 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 SMAD6O43541 496 aaKnown RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 SNAP91O60641 907 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 HSF2BPO75031 334 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 DAB1O75553 588 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 MOCS3O95396 460 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 LDOC1O95751 146 aaPredicted RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 TBC1D3HP0C7X1 549 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 GLDCP23378 1020 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 MAT2AP31153 395 aaKnown RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 CDH5P33151 784 aaPredicted RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 NOS2P35228 1153 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 GABRB2P47870 512 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 CXCR3P49682 368 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 C21orf59P57076 290 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 CDK17Q00537 523 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 SLC6A3Q01959 620 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 SULT2A1Q06520 285 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 KCNMA1Q12791 1236 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 DLG2Q15700 870 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 EXOC3L4Q17RC7 722 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 PROX2Q3B8N5 592 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 POM121L1PQ3SYA9 428 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 CCDC157Q569K6 752 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 EFHC1Q5JVL4 640 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 MIIPQ5JXC2 388 aa6.9□□□□□ -1.3
VPS53-213ENST00000572334 TTC39BQ5VTQ0 682 aaPredicted RBP6.9□□□□□ -1.3
VPS53-213ENST00000572334 TBC1D3GQ6DHY5 549 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms