RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 MIB2Q96AX9 1013 aa18.62■□□□□ 0.57
CLK3-227ENST00000570296 IL12RB2Q99665 862 aa18.62■□□□□ 0.57
CLK3-227ENST00000570296 DDX50Q9BQ39 737 aaKnown RBP18.62■□□□□ 0.57
CLK3-227ENST00000570296 ULBP1Q9BZM6 244 aa18.62■□□□□ 0.57
CLK3-227ENST00000570296 SYNDIG1Q9H7V2 258 aa18.62■□□□□ 0.57
CLK3-227ENST00000570296 FZD3Q9NPG1 666 aa18.62■□□□□ 0.57
CLK3-227ENST00000570296 TMPRSS4Q9NRS4 437 aa18.62■□□□□ 0.57
CLK3-227ENST00000570296 PPM1HQ9ULR3 514 aa18.62■□□□□ 0.57
CLK3-227ENST00000570296 CASC3O15234 703 aaKnown RBP18.61■□□□□ 0.57
CLK3-227ENST00000570296 ALOX15BO15296 676 aa18.61■□□□□ 0.57
CLK3-227ENST00000570296 JMJD7P0C870 316 aa18.61■□□□□ 0.57
CLK3-227ENST00000570296 STK19P49842 368 aaPredicted RBP18.61■□□□□ 0.57
CLK3-227ENST00000570296 SLC8A3P57103 927 aa18.61■□□□□ 0.57
CLK3-227ENST00000570296 CLDN2P57739 230 aa18.61■□□□□ 0.57
CLK3-227ENST00000570296 RPS24P62847 133 aaKnown RBP18.61■□□□□ 0.57
CLK3-227ENST00000570296 BSPRYQ5W0U4 402 aa18.61■□□□□ 0.57
CLK3-227ENST00000570296 PTAR1Q7Z6K3 402 aaPredicted RBP18.61■□□□□ 0.57
CLK3-227ENST00000570296 FRS2Q8WU20 508 aa18.61■□□□□ 0.57
CLK3-227ENST00000570296 EDEM1Q92611 657 aa18.61■□□□□ 0.57
CLK3-227ENST00000570296 TFIP11Q9UBB9 837 aaKnown RBP18.61■□□□□ 0.57
CLK3-227ENST00000570296 PISDQ9UG56 409 aa18.61■□□□□ 0.57
CLK3-227ENST00000570296 UNC13CQ8NB66 2214 aa18.6■□□□□ 0.57
CLK3-227ENST00000570296 SPTY2D1-AS1A0A0U1RR47 76 aa18.6■□□□□ 0.57
CLK3-227ENST00000570296 A0A1W2PQ27 194 aa18.6■□□□□ 0.57
CLK3-227ENST00000570296 A0A1W2PQ64 194 aa18.6■□□□□ 0.57
CLK3-227ENST00000570296 A0A1W2PQC6 194 aa18.6■□□□□ 0.57
CLK3-227ENST00000570296 LUC7L3O95232 432 aaKnown RBP18.6■□□□□ 0.57
CLK3-227ENST00000570296 HGFP14210 728 aa18.6■□□□□ 0.57
CLK3-227ENST00000570296 NADSYN1Q6IA69 706 aa18.6■□□□□ 0.57
CLK3-227ENST00000570296 KYAT3Q6YP21 454 aaKnown RBP18.6■□□□□ 0.57
CLK3-227ENST00000570296 NELFCDQ8IXH7 590 aa18.6■□□□□ 0.57
CLK3-227ENST00000570296 SLC35F3Q8IY50 421 aa18.6■□□□□ 0.57
CLK3-227ENST00000570296 NDRG1Q92597 394 aaKnown RBP18.6■□□□□ 0.57
CLK3-227ENST00000570296 SLC12A9Q9BXP2 914 aa18.6■□□□□ 0.57
CLK3-227ENST00000570296 ABCC13Q9NSE7 274 aa18.6■□□□□ 0.57
CLK3-227ENST00000570296 HS3ST3A1Q9Y663 406 aa18.6■□□□□ 0.57
CLK3-227ENST00000570296 CSMD1Q96PZ7 3565 aa18.6■□□□□ 0.57
CLK3-227ENST00000570296 D6RAR5 112 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 CD58P19256 250 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 CD82P27701 267 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 CCKBRP32239 447 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 SULT2A1Q06520 285 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 CCDC15Q0P6D6 951 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 FAM26FQ5R3K3 315 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 PIP5KL1Q5T9C9 394 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 OR6B2Q6IFH4 312 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 MSANTD2Q6P1R3 559 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 BRAPQ7Z569 592 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 ZFAND4Q86XD8 727 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 APCDD1Q8J025 514 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 LMX1AQ8TE12 382 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 LRRC27Q9C0I9 530 aa18.59■□□□□ 0.57
CLK3-227ENST00000570296 FBXO2Q9UK22 296 aaPredicted RBP18.59■□□□□ 0.57
CLK3-227ENST00000570296 SRPRBQ9Y5M8 271 aaKnown RBP18.59■□□□□ 0.57
CLK3-227ENST00000570296 SETD2Q9BYW2 2564 aaPredicted RBP18.59■□□□□ 0.57
CLK3-227ENST00000570296 MED13Q9UHV7 2174 aa18.58■□□□□ 0.57
CLK3-227ENST00000570296 PRAMEF33A0A0G2JMD5 474 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 PRAMEF10O60809 474 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 AGFG2O95081 481 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 JUNDP17535 347 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 PIK3CAP42336 1068 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 VASPP50552 380 aaPredicted RBP18.58■□□□□ 0.56
CLK3-227ENST00000570296 SV2AQ7L0J3 742 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 ANKRD52Q8NB46 1076 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 TMEM159Q96B96 161 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 MYEOVQ96EZ4 313 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 BMFQ96LC9 184 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 HEXIM2Q96MH2 286 aaKnown RBP18.58■□□□□ 0.56
CLK3-227ENST00000570296 TMEM74Q96NL1 305 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 IPO9Q96P70 1041 aaKnown RBP18.58■□□□□ 0.56
CLK3-227ENST00000570296 GFM1Q96RP9 751 aaKnown RBP18.58■□□□□ 0.56
CLK3-227ENST00000570296 IMPG2Q9BZV3 1241 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 TNMDQ9H2S6 317 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 KLF15Q9UIH9 416 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 PADI4Q9UM07 663 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 LOXL2Q9Y4K0 774 aa18.58■□□□□ 0.56
CLK3-227ENST00000570296 YJEFN3A6XGL0 299 aa18.57■□□□□ 0.56
CLK3-227ENST00000570296 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.57■□□□□ 0.56
CLK3-227ENST00000570296 E7ENQ6 273 aa18.57■□□□□ 0.56
CLK3-227ENST00000570296 MCF2LO15068 1137 aa18.57■□□□□ 0.56
CLK3-227ENST00000570296 HLA-DRAP01903 254 aa18.57■□□□□ 0.56
CLK3-227ENST00000570296 SLC12A1Q13621 1099 aa18.57■□□□□ 0.56
CLK3-227ENST00000570296 MS4A13Q5J8X5 152 aa18.57■□□□□ 0.56
CLK3-227ENST00000570296 C9orf43Q8TAL5 461 aaPredicted RBP18.57■□□□□ 0.56
CLK3-227ENST00000570296 BTN2A2Q8WVV5 523 aa18.57■□□□□ 0.56
CLK3-227ENST00000570296 BACH2Q9BYV9 841 aa18.57■□□□□ 0.56
CLK3-227ENST00000570296 FOXP3Q9BZS1 431 aa18.57■□□□□ 0.56
CLK3-227ENST00000570296 NIF3L1Q9GZT8 377 aa18.57■□□□□ 0.56
CLK3-227ENST00000570296 LRRC4Q9HBW1 653 aa18.57■□□□□ 0.56
CLK3-227ENST00000570296 APOBEC3GQ9HC16 384 aaKnown RBP18.57■□□□□ 0.56
CLK3-227ENST00000570296 SPASTQ9UBP0 616 aa18.57■□□□□ 0.56
CLK3-227ENST00000570296 A0A087X0B3 334 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 IKBKBO14920 756 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 ZNF18P17022 549 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 RABIFP47224 123 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 TBX4P57082 545 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 DLG4P78352 724 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 TMEM259Q4ZIN3 620 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 DCAF6Q58WW2 860 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 ARHGAP17Q68EM7 881 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms