RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 HUS1O60921 280 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 NCAM1P13591 858 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 ICAM3P32942 547 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 RGS2P41220 211 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 BST2Q10589 180 aaKnown RBP14.76□□□□□ -0.05
VPS35-210ENST00000568784 TMEM79Q9BSE2 394 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 RTKNQ9BST9 563 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 DDX43Q9NXZ2 648 aaKnown RBP14.76□□□□□ -0.05
VPS35-210ENST00000568784 XPR1Q9UBH6 696 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 DNAJA2O60884 412 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 TNFAIP8O95379 198 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 ARSAP15289 507 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 ERCC2P18074 760 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 NFKB1P19838 968 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 MAP3K7CLP57077 242 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 PLOD1Q02809 727 aaPredicted RBP14.76□□□□□ -0.05
VPS35-210ENST00000568784 CSHL1Q14406 222 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 NAT9Q9BTE0 207 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 CACNG4Q9UBN1 327 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 DNAJB4Q9UDY4 337 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 KIAA1257Q9ULG3 409 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 RNF103-CHMP3A0A140T963 221 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 KCNU1A8MYU2 1149 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 ZBTB24O43167 697 aaPredicted RBP14.75□□□□□ -0.05
VPS35-210ENST00000568784 GAS2O43903 313 aaKnown RBP14.75□□□□□ -0.05
VPS35-210ENST00000568784 ONECUT3O60422 494 aaPredicted RBP14.75□□□□□ -0.05
VPS35-210ENST00000568784 ENDOD1O94919 500 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 C1QAP02745 245 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 BCAT1P54687 386 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 KLHDC10Q6PID8 442 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 DTNBP1Q96EV8 351 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 OSMRQ99650 979 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 CIB1Q99828 191 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 SIKE1Q9BRV8 207 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 SMIM31A0A1B0GVY4 71 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 H3BSA7 217 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 PLSCR1O15162 318 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 MTTPP55157 894 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 TUBB3Q13509 450 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 RBBP8Q99708 897 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 PRM3Q9NNZ6 103 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 ATXN10Q9UBB4 475 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 STK39Q9UEW8 545 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 IL1BP01584 269 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 SLC4A1P02730 911 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 TGFB3P10600 412 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 MYL4P12829 197 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 RXRBP28702 533 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 MS4A2Q01362 244 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 RPS6KA2Q15349 733 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 DPYSL2Q16555 572 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 PTPRHQ9HD43 1115 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 MID2Q9UJV3 735 aa14.75□□□□□ -0.05
VPS35-210ENST00000568784 PIN4Q9Y237 131 aaKnown RBP14.75□□□□□ -0.05
VPS35-210ENST00000568784 FNDC3AQ9Y2H6 1198 aaKnown RBP14.75□□□□□ -0.05
VPS35-210ENST00000568784 KIAA1217Q5T5P2 1943 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 MOCS2O96007 188 aaPredicted RBP14.74□□□□□ -0.05
VPS35-210ENST00000568784 PPIDQ08752 370 aaKnown RBP14.74□□□□□ -0.05
VPS35-210ENST00000568784 HABP4Q5JVS0 413 aaKnown RBP14.74□□□□□ -0.05
VPS35-210ENST00000568784 FAM91A1Q658Y4 838 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 APPL2Q8NEU8 664 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 TRPM4Q8TD43 1214 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 LENG1Q96BZ8 264 aaPredicted RBP14.74□□□□□ -0.05
VPS35-210ENST00000568784 UBAP1Q9NZ09 502 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 ZDHHC2Q9UIJ5 367 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 UBR3Q6ZT12 1888 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 JUNP05412 331 aaKnown RBP14.74□□□□□ -0.05
VPS35-210ENST00000568784 NMBRP28336 390 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 CDH15P55291 814 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 SH3BGRP55822 239 aaPredicted RBP14.74□□□□□ -0.05
VPS35-210ENST00000568784 ZNF280DQ6N043 979 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 DENND6AQ8IWF6 608 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 ZNF786Q8N393 782 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 ARNTL2Q8WYA1 636 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 PLEKHA5Q9HAU0 1116 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 A0A1B0GTW7 788 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 PABPC4LP0CB38 370 aaKnown RBP14.74□□□□□ -0.05
VPS35-210ENST00000568784 CEACAM7Q14002 265 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 MTX3Q5HYI7 312 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 SPANXN3Q5MJ09 141 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 SYPL2Q5VXT5 272 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 MOB2Q70IA6 237 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 MTMR14Q8NCE2 650 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 HDAC11Q96DB2 347 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 SLC39A3Q9BRY0 314 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 STN1Q9H668 368 aaKnown RBP14.74□□□□□ -0.05
VPS35-210ENST00000568784 PGAP2Q9UHJ9 254 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 ACOT9Q9Y305 439 aa14.74□□□□□ -0.05
VPS35-210ENST00000568784 HEMK1Q9Y5R4 338 aaPredicted RBP14.74□□□□□ -0.05
VPS35-210ENST00000568784 LOXHD1Q8IVV2 1947 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 EVPLQ92817 2033 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 TIMM44O43615 452 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 ATP5BP06576 529 aaKnown RBP14.73□□□□□ -0.05
VPS35-210ENST00000568784 PPARGP37231 505 aaPredicted RBP14.73□□□□□ -0.05
VPS35-210ENST00000568784 LSAMPQ13449 338 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 FAM219BQ5XKK7 198 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 OTOP3Q7RTS5 596 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 SPATA22Q8NHS9 363 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 NXF3Q9H4D5 531 aaKnown RBP14.73□□□□□ -0.05
VPS35-210ENST00000568784 SETD4Q9NVD3 440 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms