RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-215	ENST00000565442	TAOK3	Q9H2K8	898 aa		4.87	□□□□□ -1.63
CHD9-215	ENST00000565442	ERVK-5	Q9HDB9	667 aa		4.87	□□□□□ -1.63
CHD9-215	ENST00000565442	TMEM248	Q9NWD8	314 aa		4.87	□□□□□ -1.63
CHD9-215	ENST00000565442	KLHL13	Q9P2N7	655 aa		4.87	□□□□□ -1.63
CHD9-215	ENST00000565442	SLC8A2	Q9UPR5	921 aa		4.87	□□□□□ -1.63
CHD9-215	ENST00000565442	DTX4	Q9Y2E6	619 aa		4.87	□□□□□ -1.63
CHD9-215	ENST00000565442	WDR17	Q8IZU2	1322 aa		4.87	□□□□□ -1.63
CHD9-215	ENST00000565442	CACNA1I	Q9P0X4	2223 aa		4.87	□□□□□ -1.63
CHD9-215	ENST00000565442	CXorf65	A6NEN9	183 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	FAM90A7P	A6NKC0	464 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	FAM90A22P	A8MWA6	464 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	FAM90A12P	A8MX19	464 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	FAM90A23P	A8MXZ1	464 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	CCNT1	O60563	726 aa	Known RBP	4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	MBD4	O95243	580 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	SGPL1	O95470	568 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	NFATC1	O95644	943 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	LATS1	O95835	1130 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	CD72	P21854	359 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	MPG	P29372	298 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	ELF1	P32519	619 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	KRT9	P35527	623 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	HNF1B	P35680	557 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	GGT5	P36269	586 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	OAZ1	P54368	228 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	MPP1	Q00013	466 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	DDX10	Q13206	875 aa	Known RBP	4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	IL13RA2	Q14627	380 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	NAA25	Q14CX7	972 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	GPR68	Q15743	365 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	UBAP2	Q5T6F2	1119 aa	Known RBP	4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	MIS18BP1	Q6P0N0	1132 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	SLC22A25	Q6T423	547 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	MAATS1	Q7Z4T9	603 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	KLB	Q86Z14	1044 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	PAQR4	Q8N4S7	273 aa	Predicted RBP	4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	FAM47B	Q8NA70	645 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	LSM14A	Q8ND56	463 aa	Known RBP	4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	ZUFSP	Q96AP4	578 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	RNF125	Q96EQ8	232 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	SCNM1	Q9BWG6	230 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	AGXT2	Q9BYV1	514 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	TTYH1	Q9H313	450 aa	Predicted RBP	4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	ALKBH4	Q9NXW9	302 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	IPO11	Q9UI26	975 aa	Known RBP	4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	CNOT7	Q9UIV1	285 aa	Known RBP	4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	LRP12	Q9Y561	859 aa		4.86	□□□□□ -1.63
CHD9-215	ENST00000565442	CYP2D7	A0A087X1C5	515 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	CD4	P01730	458 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	POLG	P54098	1239 aa	Predicted RBP	4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	RPP30	P78346	268 aa	Known RBP	4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	RHAG	Q02094	409 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	SEMA3A	Q14563	771 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	CEP78	Q5JTW2	689 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	YTHDF3	Q7Z739	585 aa	Known RBP	4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	ADGRG6	Q86SQ4	1221 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	TMEM217	Q8N7C4	229 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	PCYOX1L	Q8NBM8	494 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	RUFY2	Q8WXA3	655 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	APOPT1	Q96IL0	206 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	CD180	Q99467	661 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	JMJD4	Q9H9V9	463 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	MOV10	Q9HCE1	1003 aa	Known RBP	4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	PREB	Q9HCU5	417 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	SMC4	Q9NTJ3	1288 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	HDAC6	Q9UBN7	1215 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	UPB1	Q9UBR1	384 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	TNFSF13B	Q9Y275	285 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	TMEM98	Q9Y2Y6	226 aa		4.85	□□□□□ -1.63
CHD9-215	ENST00000565442	C2CD4B	A6NLJ0	364 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	C17orf100	A8MU93	164 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	KCNJ18	B7U540	433 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	INSIG1	O15503	277 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	MSI1	O43347	362 aa	Known RBP	4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	GUCY1B2	O75343	617 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	TULP3	O75386	442 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	TFEB	P19484	476 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	CERS1	P27544	350 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	ABCD3	P28288	659 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	DDIT3	P35638	169 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	PTPN9	P43378	593 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	MTNR1A	P48039	350 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	STIM1	Q13586	685 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	GALNT3	Q14435	633 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	PGM5	Q15124	567 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	EARS2	Q5JPH6	523 aa	Known RBP	4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	KIAA1755	Q5JYT7	1200 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	NAPEPLD	Q6IQ20	393 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	ACAD10	Q6JQN1	1059 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	RSRC2	Q7L4I2	434 aa	Known RBP	4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	ADGRF4	Q8IZF3	695 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	TSPYL6	Q8N831	410 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	SCAI	Q8N9R8	606 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	PPHLN1	Q8NEY8	458 aa	Known RBP	4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	TBC1D22A	Q8WUA7	517 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	NCSTN	Q92542	709 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	KAT2A	Q92830	837 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	ELP4	Q96EB1	424 aa		4.84	□□□□□ -1.63
CHD9-215	ENST00000565442	EYA3	Q99504	573 aa		4.84	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms