RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	TERB1	Q8NA31	727 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	HIPK4	Q8NE63	616 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	DDHD1	Q8NEL9	900 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	OR5B17	Q8NGF7	314 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	TFB1M	Q8WVM0	346 aa	Known RBP	11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	ZNF516	Q92618	1163 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	EME1	Q96AY2	570 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	ARMC5	Q96C12	935 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	NEURL2	Q9BR09	285 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	TRIM56	Q9BRZ2	755 aa	Known RBP	11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	APOL6	Q9BWW8	343 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	FRMD8	Q9BZ67	464 aa	Predicted RBP	11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	CRISPLD2	Q9H0B8	497 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	AGO3	Q9H9G7	860 aa	Known RBP	11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	CYP4F11	Q9HBI6	524 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	SLC38A7	Q9NVC3	462 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	PARVA	Q9NVD7	372 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	HESX1	Q9UBX0	185 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	XPO7	Q9UIA9	1087 aa	Known RBP	11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	GNPTG	Q9UJJ9	305 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	CROT	Q9UKG9	612 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	UST	Q9Y2C2	406 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	MYRF	Q9Y2G1	1151 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	HEY1	Q9Y5J3	304 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	CCDC195	A0A1B0GUA6	201 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	PI4K2B	G5E9Z4	385 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	TRDMT1	O14717	391 aa	Known RBP	11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	TLR3	O15455	904 aa	Known RBP	11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	GSTT2	P0CG29	244 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	GSTT2B	P0CG30	244 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	COX4I1	P13073	169 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	CD52	P31358	61 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	RPL22	P35268	128 aa	Known RBP	11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	ELK3	P41970	407 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	RPS3A	P61247	264 aa	Known RBP	11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	TFAM	Q00059	246 aa	Known RBP	11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	CDKL1	Q00532	357 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	GK3P	Q14409	553 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	FBXO47	Q5MNV8	452 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	C6orf52	Q5T4I8	152 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	PDPK2P	Q6A1A2	396 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	GPR180	Q86V85	440 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	TAS1R2	Q8TE23	839 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	PPP4R1	Q8TF05	950 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	ELMO3	Q96BJ8	720 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	ZNF778	Q96MU6	729 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	UNK	Q9C0B0	810 aa	Known RBP	11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	C20orf27	Q9GZN8	174 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	HIPK3	Q9H422	1215 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	NXF3	Q9H4D5	531 aa	Known RBP	11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	PNPLA3	Q9NST1	481 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	SNTG2	Q9NY99	539 aa		11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	GPC6	Q9Y625	555 aa	Predicted RBP	11.29	□□□□□ -0.6
TCF4-222	ENST00000564228	TET1	Q8NFU7	2136 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	LACTBL1	A8MY62	500 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	GPR182	O15218	404 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	PIAS1	O75925	651 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	KRT38	O76015	456 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	CCDC130	P13994	396 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	CDH3	P22223	829 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	PRKCH	P24723	683 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	GRM5	P41594	1212 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	NOMO3	P69849	1222 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	CLDN10	P78369	228 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	SURF1	Q15526	300 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	KYAT1	Q16773	422 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	ZBED5	Q49AG3	693 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	TDRD10	Q5VZ19	366 aa	Known RBP	11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	PAOX	Q6QHF9	649 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	C16orf89	Q6UX73	402 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	FRMD7	Q6ZUT3	714 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	CARM1	Q86X55	608 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	WDR49	Q8IV35	697 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	ZNF420	Q8TAQ5	688 aa	Predicted RBP	11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	KBTBD7	Q8WVZ9	684 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	PLEKHA8	Q96JA3	519 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	GPATCH1	Q9BRR8	931 aa	Known RBP	11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	PI4K2A	Q9BTU6	479 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	OSBPL11	Q9BXB4	747 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	MTMR12	Q9C0I1	747 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	ZNF395	Q9H8N7	513 aa	Predicted RBP	11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	EPS15L1	Q9UBC2	864 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	PADI3	Q9ULW8	664 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	B3GNT3	Q9Y2A9	372 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	DNAJC16	Q9Y2G8	782 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	TTLL3	Q9Y4R7	772 aa		11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	MKI67	P46013	3256 aa	Known RBP	11.28	□□□□□ -0.6
TCF4-222	ENST00000564228	TANC1	Q9C0D5	1861 aa		11.27	□□□□□ -0.6
TCF4-222	ENST00000564228	MYOCOS	A0A1B0GUC4	107 aa		11.27	□□□□□ -0.6
TCF4-222	ENST00000564228	IL18RAP	O95256	599 aa		11.27	□□□□□ -0.6
TCF4-222	ENST00000564228	C4BPA	P04003	597 aa	Known RBP	11.27	□□□□□ -0.6
TCF4-222	ENST00000564228	NFIC	P08651	508 aa		11.27	□□□□□ -0.6
TCF4-222	ENST00000564228	TMEM191B	P0C7N4	346 aa		11.27	□□□□□ -0.6
TCF4-222	ENST00000564228	AKAP5	P24588	427 aa		11.27	□□□□□ -0.6
TCF4-222	ENST00000564228	IDH3A	P50213	366 aa		11.27	□□□□□ -0.6
TCF4-222	ENST00000564228	SERPINB9	P50453	376 aa		11.27	□□□□□ -0.6
TCF4-222	ENST00000564228	C21orf59	P57076	290 aa		11.27	□□□□□ -0.6
TCF4-222	ENST00000564228	ESRRG	P62508	458 aa		11.27	□□□□□ -0.6
TCF4-222	ENST00000564228	TRPC3	Q13507	836 aa		11.27	□□□□□ -0.6
TCF4-222	ENST00000564228	INA	Q16352	499 aa		11.27	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms