RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 PPP1R12AO14974 1030 aaPredicted RBP10.3□□□□□ -0.76
USP3-216ENST00000559873 LAMTOR5O43504 91 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 KDELR3O43731 214 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 SYNCRIPO60506 623 aaKnown RBP10.3□□□□□ -0.76
USP3-216ENST00000559873 ZNF189O75820 626 aaPredicted RBP10.3□□□□□ -0.76
USP3-216ENST00000559873 ALDH1A2O94788 518 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 TGM2P21980 687 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 PTPN7P35236 360 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 CDKN2BP42772 138 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 DNA2P51530 1060 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 DGKEP52429 567 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 MMRN1Q13201 1228 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 ZNF234Q14588 700 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 PAFAH1B3Q15102 231 aaKnown RBP10.3□□□□□ -0.76
USP3-216ENST00000559873 TMCO4Q5TGY1 634 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 TMEM215Q68D42 235 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 NCBP2-AS2Q69YL0 99 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 SLC9A4Q6AI14 798 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 TIGD7Q6NT04 549 aaPredicted RBP10.3□□□□□ -0.76
USP3-216ENST00000559873 MAMSTRQ6ZN01 415 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 REXO1L1PQ8IX06 675 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 APCDD1Q8J025 514 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 NPWQ8N729 165 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 IL17RCQ8NAC3 791 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 TXNDC5Q8NBS9 432 aaKnown RBP10.3□□□□□ -0.76
USP3-216ENST00000559873 TSTD1Q8NFU3 115 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 PCDH19Q8TAB3 1148 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 CYB5D2Q8WUJ1 264 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 ALG14Q96F25 216 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 HMCESQ96FZ2 354 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 CELF6Q96J87 481 aaKnown RBP10.3□□□□□ -0.76
USP3-216ENST00000559873 GABRG3Q99928 467 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 ACE2Q9BYF1 805 aaPredicted RBP10.3□□□□□ -0.76
USP3-216ENST00000559873 CEP44Q9C0F1 390 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 CARD9Q9H257 536 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 LRRC19Q9H756 370 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 CACNA2D2Q9NY47 1150 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 SUN2Q9UH99 717 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 PYCARDQ9ULZ3 195 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 EFR3BQ9Y2G0 817 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 JRKLQ9Y4A0 524 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 STON1Q9Y6Q2 735 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 hCG_1818297A0A087WSY0 165 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 EDDM13A0A1B0GTR0 161 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 C3orf70A6NLC5 250 aaPredicted RBP10.29□□□□□ -0.76
USP3-216ENST00000559873 KCNK3O14649 394 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 MFSD11O43934 449 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 SNAP91O60641 907 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 CST8O60676 142 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 TJP3O95049 919 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 PAPSS2O95340 614 aaPredicted RBP10.29□□□□□ -0.76
USP3-216ENST00000559873 EPHX1P07099 455 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 IL4RP24394 825 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 AVPR2P30518 371 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 IL12RB1P42701 662 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 RECQLP46063 649 aaPredicted RBP10.29□□□□□ -0.76
USP3-216ENST00000559873 CXCL12P48061 93 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 NR2C2P49116 596 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 SERPINH1P50454 418 aaKnown RBP10.29□□□□□ -0.76
USP3-216ENST00000559873 PEX5P50542 639 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 DYNLT1P63172 113 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 ARF5P84085 180 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 IL10RBQ08334 325 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 MTAPQ13126 283 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 FZD5Q13467 585 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 SERINC3Q13530 473 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 ENPP2Q13822 863 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 RFTN1Q14699 578 aaPredicted RBP10.29□□□□□ -0.76
USP3-216ENST00000559873 CRY1Q16526 586 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 TAZQ16635 292 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 PTPRNQ16849 979 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 HNRNPA1L2Q32P51 320 aaKnown RBP10.29□□□□□ -0.76
USP3-216ENST00000559873 ACCSLQ4AC99 568 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 ZNF569Q5MCW4 686 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 ARTNQ5T4W7 220 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 MEI1Q5TIA1 1274 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 AFMIDQ63HM1 303 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 KAZNQ674X7 775 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 MFSD7Q6UXD7 560 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 DSG4Q86SJ6 1040 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 SH2D3CQ8N5H7 860 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 CCDC33Q8N5R6 958 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 PQLC3Q8N755 202 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 TMEM105Q8N8V8 129 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 ATP11CQ8NB49 1132 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 DTWD2Q8NBA8 298 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 OR52K2Q8NGK3 314 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 SORCS1Q8WY21 1168 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 ALG3Q92685 438 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 ZNF599Q96NL3 588 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 PSMB7Q99436 277 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 PRRX2Q99811 253 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 FERMT1Q9BQL6 677 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 OSBPL8Q9BZF1 889 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 SLC39A8Q9C0K1 460 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 BRD8Q9H0E9 1235 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 C11orf16Q9NQ32 467 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 KCND1Q9NSA2 647 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 DLGAP2Q9P1A6 1054 aa10.29□□□□□ -0.76
USP3-216ENST00000559873 UBA2Q9UBT2 640 aaPredicted RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms