RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	PPP3CC	P48454	512 aa		4.92	□□□□□ -1.62
VPS13C-208	ENST00000559119	AMT	P48728	403 aa		4.92	□□□□□ -1.62
VPS13C-208	ENST00000559119	OAZ1	P54368	228 aa		4.92	□□□□□ -1.62
VPS13C-208	ENST00000559119	HNF4G	Q14541	408 aa		4.92	□□□□□ -1.62
VPS13C-208	ENST00000559119	WBP2NL	Q6ICG8	309 aa		4.92	□□□□□ -1.62
VPS13C-208	ENST00000559119	SLC35F5	Q8WV83	523 aa		4.92	□□□□□ -1.62
VPS13C-208	ENST00000559119	WBP1	Q96G27	269 aa		4.92	□□□□□ -1.62
VPS13C-208	ENST00000559119	PKP3	Q9Y446	797 aa		4.92	□□□□□ -1.62
VPS13C-208	ENST00000559119		A0A0B4J293	547 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	PIP5K1B	O14986	540 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	PMM2	O15305	246 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	ZNF12	P17014	697 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	NAGA	P17050	411 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	HOXB9	P17482	250 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	TCEA1	P23193	301 aa	Known RBP	4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	ITGB8	P26012	769 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	POU5F1B	Q06416	359 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	SF3A3	Q12874	501 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	PLK5	Q496M5	336 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	VWA5B1	Q5TIE3	1220 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	FAM171A1	Q5VUB5	890 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	FBXL22	Q6P050	247 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	FMNL3	Q8IVF7	1028 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	ENDOV	Q8N8Q3	282 aa	Known RBP	4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	CEP76	Q8TAP6	659 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	IPO4	Q8TEX9	1081 aa	Known RBP	4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	IGSF21	Q96ID5	467 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	GFM1	Q96RP9	751 aa	Known RBP	4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	FIZ1	Q96SL8	496 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	SARG	Q9BW04	601 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	DDX31	Q9H8H2	851 aa	Known RBP	4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	ZDHHC7	Q9NXF8	308 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	SLC25A13	Q9UJS0	675 aa		4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	SRPRB	Q9Y5M8	271 aa	Known RBP	4.91	□□□□□ -1.62
VPS13C-208	ENST00000559119	MBD3L5	A6NJ08	208 aa	Predicted RBP	4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	KRT36	O76013	467 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	LARGE1	O95461	756 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	HLA-DQA2	P01906	255 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	MYL3	P08590	195 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	SNRNP70	P08621	437 aa	Known RBP	4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	MYZAP	P0CAP1	466 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	UNG	P13051	313 aa	Predicted RBP	4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	GNLY	P22749	145 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	HSPA7	P48741	367 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	IZUMO3	Q5VZ72	239 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	CCAR1	Q8IX12	1150 aa	Known RBP	4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	TCP11L2	Q8N4U5	519 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	HES6	Q96HZ4	224 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	RIPOR3	Q96MK2	946 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	PRPF18	Q99633	342 aa	Known RBP	4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	MECR	Q9BV79	373 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	NAA15	Q9BXJ9	866 aa	Known RBP	4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	OCIAD1	Q9NX40	245 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	SLC39A10	Q9ULF5	831 aa		4.9	□□□□□ -1.63
VPS13C-208	ENST00000559119	SLC38A8	A6NNN8	435 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	RASA4B	C9J798	803 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	APAF1	O14727	1248 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	RASA4	O43374	803 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	DNPH1	O43598	174 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	LDB2	O43679	373 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	BUB3	O43684	328 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	TMCC1	O94876	653 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	RCAN1	P53805	252 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	CDH12	P55289	794 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	DLX5	P56178	289 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	TUBA1B	P68363	451 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	MPEG1	Q2M385	716 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	ZNF284	Q2VY69	593 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	C5orf22	Q49AR2	442 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	MIGA1	Q8NAN2	632 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	TMEM255B	Q8WV15	326 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	HMGB4	Q8WW32	186 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	DOCK7	Q96N67	2140 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	TCF7L2	Q9NQB0	619 aa		4.89	□□□□□ -1.63
VPS13C-208	ENST00000559119	NTN3	O00634	580 aa	Predicted RBP	4.88	□□□□□ -1.63
VPS13C-208	ENST00000559119	DAO	P14920	347 aa		4.88	□□□□□ -1.63
VPS13C-208	ENST00000559119	THPO	P40225	353 aa		4.88	□□□□□ -1.63
VPS13C-208	ENST00000559119	TRAF3	Q13114	568 aa		4.88	□□□□□ -1.63
VPS13C-208	ENST00000559119	MUL1	Q969V5	352 aa		4.88	□□□□□ -1.63
VPS13C-208	ENST00000559119	CERS4	Q9HA82	394 aa		4.88	□□□□□ -1.63
VPS13C-208	ENST00000559119	CDH22	Q9UJ99	828 aa		4.88	□□□□□ -1.63
VPS13C-208	ENST00000559119	PCDHGB2	Q9Y5G2	931 aa		4.88	□□□□□ -1.63
VPS13C-208	ENST00000559119	LINC01553	A4QN01	128 aa		4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	AGAP5	A6NIR3	686 aa		4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	ITM2A	O43736	263 aa		4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	SERPINI2	O75830	405 aa		4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	ENO3	P13929	434 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	PCP4	P48539	62 aa		4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	ZRSR1	Q15695	479 aa	Known RBP	4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	KRTAP24-1	Q3LI83	254 aa		4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	ZACN	Q401N2	412 aa		4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	MON1B	Q7L1V2	547 aa		4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	GATAD2A	Q86YP4	633 aa		4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	MUC20	Q8N307	709 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	RFLNB	Q8N5W9	214 aa		4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	OR2C3	Q8N628	320 aa		4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	C18orf8	Q96DM3	657 aa		4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	STK33	Q9BYT3	514 aa		4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119	TP63	Q9H3D4	680 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS13C-208	ENST00000559119		Q9N2J8	555 aa		4.87	□□□□□ -1.63

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