RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 DPYSQ14117 519 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 FAM182AQ5T1J6 154 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 PLD6Q8N2A8 252 aaKnown RBP16.6■□□□□ 0.25
SHMT2-232ENST00000557487 MAPK15Q8TD08 544 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 PDCD6IPQ8WUM4 868 aaKnown RBP16.6■□□□□ 0.25
SHMT2-232ENST00000557487 ZNF669Q96BR6 464 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-232ENST00000557487 NMD3Q96D46 503 aaKnown RBP16.6■□□□□ 0.25
SHMT2-232ENST00000557487 OR52B2Q96RD2 323 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 CDRT15Q96T59 188 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 HAUS8Q9BT25 410 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 CASS4Q9NQ75 786 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 FAM49BQ9NUQ9 324 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 UTP6Q9NYH9 597 aaKnown RBP16.6■□□□□ 0.25
SHMT2-232ENST00000557487 EPS15L1Q9UBC2 864 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 CDYLQ9Y232 598 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 COL1A2P08123 1366 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 A0A087WZ62 844 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 DAB1O75553 588 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 PGM3O95394 542 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 SLC25A27O95847 323 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 THOP1P52888 689 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 MPP3Q13368 585 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 SOWAHAQ2M3V2 549 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 ANO4Q32M45 955 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 LSM12Q3MHD2 195 aaKnown RBP16.59■□□□□ 0.25
SHMT2-232ENST00000557487 LDLRAD1Q5T700 205 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 BSPRYQ5W0U4 402 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 ZNF410Q86VK4 478 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 TNS4Q8IZW8 715 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 CRYBG2Q8N1P7 616 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 ZNF668Q96K58 619 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-232ENST00000557487 FCRL3Q96P31 734 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-232ENST00000557487 FDXACB1Q9BRP7 624 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-232ENST00000557487 MCMBPQ9BTE3 642 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 MAN1C1Q9NR34 630 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 ZNF358Q9NW07 568 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 UBAP1Q9NZ09 502 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 SNX9Q9Y5X1 595 aa16.59■□□□□ 0.25
SHMT2-232ENST00000557487 ZCWPW2A0A1B0GU75 182 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 PSMD8P48556 350 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 VEGFBP49765 207 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 CSRP3P50461 194 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 ART3Q13508 389 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 PEX6Q13608 980 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 NADK2Q4G0N4 442 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 INTS6LQ5JSJ4 861 aaKnown RBP16.58■□□□□ 0.25
SHMT2-232ENST00000557487 RGMBQ6NW40 437 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 KLHDC10Q6PID8 442 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 PID1Q7Z2X4 250 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 CCNYQ8ND76 341 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 CPB2Q96IY4 423 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 AGAP3Q96P47 875 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 ACE2Q9BYF1 805 aaPredicted RBP16.58■□□□□ 0.25
SHMT2-232ENST00000557487 WDR41Q9HAD4 459 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 ZBTB26Q9HCK0 441 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 TLK1Q9UKI8 766 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 TRHDEQ9UKU6 1024 aa16.58■□□□□ 0.25
SHMT2-232ENST00000557487 USP2O75604 605 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-232ENST00000557487 OR6B1O95007 311 aa16.58■□□□□ 0.24
SHMT2-232ENST00000557487 HSPA1AP0DMV8 641 aaKnown RBP16.58■□□□□ 0.24
SHMT2-232ENST00000557487 HSPA1BP0DMV9 641 aaKnown RBP16.58■□□□□ 0.24
SHMT2-232ENST00000557487 ATXN1P54253 815 aaKnown RBP16.58■□□□□ 0.24
SHMT2-232ENST00000557487 MRPS22P82650 360 aaKnown RBP16.58■□□□□ 0.24
SHMT2-232ENST00000557487 ITPRIPL1Q6GPH6 555 aa16.58■□□□□ 0.24
SHMT2-232ENST00000557487 EEPD1Q7L9B9 569 aa16.58■□□□□ 0.24
SHMT2-232ENST00000557487 TMEM130Q8N3G9 435 aa16.58■□□□□ 0.24
SHMT2-232ENST00000557487 BEST2Q8NFU1 509 aa16.58■□□□□ 0.24
SHMT2-232ENST00000557487 RIN3Q8TB24 985 aa16.58■□□□□ 0.24
SHMT2-232ENST00000557487 TRPC4APQ8TEL6 797 aa16.58■□□□□ 0.24
SHMT2-232ENST00000557487 SLC9A7Q96T83 725 aa16.58■□□□□ 0.24
SHMT2-232ENST00000557487 VAT1Q99536 393 aa16.58■□□□□ 0.24
SHMT2-232ENST00000557487 GPR22Q99680 433 aa16.58■□□□□ 0.24
SHMT2-232ENST00000557487 OXCT2Q9BYC2 517 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-232ENST00000557487 PRDM12Q9H4Q4 367 aa16.58■□□□□ 0.24
SHMT2-232ENST00000557487 KLHL8Q9P2G9 620 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-232ENST00000557487 GNEQ9Y223 722 aaKnown RBP16.58■□□□□ 0.24
SHMT2-232ENST00000557487 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-232ENST00000557487 TRPC5OSA6NMA1 111 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-232ENST00000557487 PSMD3O43242 534 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 DDHD2O94830 711 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 XRCC1P18887 633 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-232ENST00000557487 TFEBP19484 476 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 SULT1E1P49888 294 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 TTLL12Q14166 644 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-232ENST00000557487 MOB2Q70IA6 237 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 BNIPLQ7Z465 357 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 EFCAB3Q8N7B9 438 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 OR52K1Q8NGK4 314 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 OR6B3Q8NGW1 331 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 PPP1R14BQ96C90 147 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 VPS39Q96JC1 886 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 CAPNS2Q96L46 248 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 CATSPER2Q96P56 530 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 SLC2A11Q9BYW1 496 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 ZCWPW1Q9H0M4 648 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 MRM3Q9HC36 420 aaKnown RBP16.57■□□□□ 0.24
SHMT2-232ENST00000557487 SEPT10Q9P0V9 454 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 STAP1Q9ULZ2 295 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 MFHAS1Q9Y4C4 1052 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms