RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 J3KR12 359 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 K7ERQ8 282 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 TIMM44O43615 452 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 KDELR3O43731 214 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 RNF40O75150 1001 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 CD160O95971 181 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 DCNP07585 359 aaKnown RBP13.11□□□□□ -0.31
SHMT2-227ENST00000557269 DLDP09622 509 aaKnown RBP13.11□□□□□ -0.31
SHMT2-227ENST00000557269 POLR2EP19388 210 aaKnown RBP13.11□□□□□ -0.31
SHMT2-227ENST00000557269 GALNT2Q10471 571 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 PREPLQ4J6C6 727 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-227ENST00000557269 FAM182AQ5T1J6 154 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 BBS12Q6ZW61 710 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 LZTR1Q8N653 840 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 ALLCQ8N6M5 410 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 DCAF4L2Q8NA75 395 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 USP33Q8TEY7 942 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 COG1Q8WTW3 980 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 UBE2Q2Q8WVN8 375 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 EXOC4Q96A65 974 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 MYO19Q96H55 970 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 MS4A14Q96JA4 679 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 NELL2Q99435 816 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 FAM118BQ9BPY3 351 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 CARD9Q9H257 536 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 MFSD1Q9H3U5 465 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 C11orf16Q9NQ32 467 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 C2orf42Q9NWW7 574 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 ERVW-1Q9UQF0 538 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 SIT1Q9Y3P8 196 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 HEY1Q9Y5J3 304 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 TTC28Q96AY4 2481 aa13.11□□□□□ -0.31
SHMT2-227ENST00000557269 MUC22E2RYF6 1773 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-227ENST00000557269 FAM86C2PA6NEL3 165 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 ZNF185O15231 689 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 MAFKO60675 156 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 WASP42768 502 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 ETF1P62495 437 aaKnown RBP13.1□□□□□ -0.31
SHMT2-227ENST00000557269 ECT2LQ008S8 904 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 KLF1Q13351 362 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-227ENST00000557269 TFDP2Q14188 446 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 ZNF234Q14588 700 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 EIF4HQ15056 248 aaKnown RBP13.1□□□□□ -0.31
SHMT2-227ENST00000557269 DGKKQ5KSL6 1271 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 SYT10Q6XYQ8 523 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 ADAT2Q7Z6V5 191 aaKnown RBP13.1□□□□□ -0.31
SHMT2-227ENST00000557269 ZNF354CQ86Y25 554 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 ZNF366Q8N895 744 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 ZNF513Q8N8E2 541 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-227ENST00000557269 IL17RCQ8NAC3 791 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 RPLP0P6Q8NHW5 317 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 CLDN23Q96B33 292 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 ERLEC1Q96DZ1 483 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 C16orf45Q96MC5 204 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-227ENST00000557269 OLFM3Q96PB7 478 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 OSBPL9Q96SU4 736 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 OSBPL6Q9BZF3 934 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 MTG2Q9H4K7 406 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 PDFQ9HBH1 243 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 CACNA2D2Q9NY47 1150 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 DONSONQ9NYP3 566 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 SMARCAL1Q9NZC9 954 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 DLGAP2Q9P1A6 1054 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 THAP10Q9P2Z0 257 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-227ENST00000557269 SNX12Q9UMY4 172 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 EFR3BQ9Y2G0 817 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 R3HDM2Q9Y2K5 976 aaKnown RBP13.1□□□□□ -0.31
SHMT2-227ENST00000557269 NUP205Q92621 2012 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 MUC3AQ02505 3323 aa13.1□□□□□ -0.31
SHMT2-227ENST00000557269 ARHGAP42A6NI28 874 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 TTC34A8MYJ7 566 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 SGK1O00141 431 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 SMAD6O43541 496 aaKnown RBP13.09□□□□□ -0.31
SHMT2-227ENST00000557269 CEP104O60308 925 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 PRAMEF11O60813 436 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 ADAM23O75077 832 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 KLF8O95600 359 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-227ENST00000557269 PEX11BO96011 259 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 ATP5BP06576 529 aaKnown RBP13.09□□□□□ -0.31
SHMT2-227ENST00000557269 HLA-EP13747 358 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 HNRNPLP14866 589 aaKnown RBP eCLIP13.09□□□□□ -0.31
SHMT2-227ENST00000557269 VAV1P15498 845 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 ZFXP17010 805 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-227ENST00000557269 TGM2P21980 687 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 PRKCHP24723 683 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 MSNP26038 577 aaKnown RBP13.09□□□□□ -0.31
SHMT2-227ENST00000557269 SERPINB6P35237 376 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 ETFBP38117 255 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 GARSP41250 739 aaKnown RBP13.09□□□□□ -0.31
SHMT2-227ENST00000557269 IL12RB1P42701 662 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 ENPP2Q13822 863 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 FBXO43Q4G163 708 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 SEL1L2Q5TEA6 688 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 PAPD7Q5XG87 772 aaKnown RBP13.09□□□□□ -0.31
SHMT2-227ENST00000557269 NUDT18Q6ZVK8 323 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 ZSCAN30Q86W11 494 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 SLC13A5Q86YT5 568 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-227ENST00000557269 ACDQ96AP0 544 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 PBXIP1Q96AQ6 731 aa13.09□□□□□ -0.31
SHMT2-227ENST00000557269 LGMNQ99538 433 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms