RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	EYS	Q5T1H1	3165 aa		12.16	□□□□□ -0.46
DDB1-223	ENST00000543658	TBC1D3B	A6NDS4	549 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	OTOL1	A6NHN0	477 aa	Predicted RBP	12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	SGK1	O00141	431 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	KDELR3	O43731	214 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	LIAS	O43766	372 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	ASL	P04424	464 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	ATP5B	P06576	529 aa	Known RBP	12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	CCNC	P24863	283 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	CHRNA3	P32297	505 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	CTH	P32929	405 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	SLC6A11	P48066	632 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	SOX9	P48436	509 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	FNTA	P49354	379 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	NUMB	P49757	651 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	PLK1	P53350	603 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	ST8SIA6	P61647	398 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	ZNF33A	Q06730	810 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	IL10RB	Q08334	325 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	PPID	Q08752	370 aa	Known RBP	12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	C2orf54	Q08AI8	447 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	SLC10A2	Q12908	348 aa	Predicted RBP	12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	EIF4H	Q15056	248 aa	Known RBP	12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	FUT11	Q495W5	492 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	SLC45A4	Q5BKX6	768 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	ARTN	Q5T4W7	220 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	AFMID	Q63HM1	303 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	MBLAC2	Q68D91	279 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	CCDC70	Q6NSX1	233 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	CCDC137	Q6PK04	289 aa	Known RBP	12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	TPRG1	Q6ZUI0	275 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	METTL3	Q86U44	580 aa	Known RBP	12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	KLHL7	Q8IXQ5	586 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	APCDD1	Q8J025	514 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	12.15	□□□□□ -0.46	3e-7	■□□□□ 9.3
DDB1-223	ENST00000543658	TERB1	Q8NA31	727 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	C12orf50	Q8NA57	414 aa	Predicted RBP	12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	OLFM3	Q96PB7	478 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	FEM1A	Q9BSK4	669 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	KLC2	Q9H0B6	622 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	NOL6	Q9H6R4	1146 aa	Known RBP	12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	UBA2	Q9UBT2	640 aa	Predicted RBP	12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	FEZ2	Q9UHY8	353 aa	Predicted RBP	12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	FBXO10	Q9UK96	956 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	DNPEP	Q9ULA0	475 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	CLEC4E	Q9ULY5	219 aa		12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	R3HDM2	Q9Y2K5	976 aa	Known RBP	12.15	□□□□□ -0.46
DDB1-223	ENST00000543658	C19orf67	A6NJJ6	358 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	MAN2B1	O00754	1011 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	KCNN4	O15554	427 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	KAT7	O95251	611 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	GAS8	O95995	478 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	BMP1	P13497	986 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	OPRD1	P41143	372 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	GRIA2	P42262	883 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	GRSF1	Q12849	480 aa	Known RBP eCLIP	12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	ZNF235	Q14590	738 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	SIX1	Q15475	284 aa	Predicted RBP	12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	MLF2	Q15773	248 aa	Predicted RBP	12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	TJAP1	Q5JTD0	557 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	TMCO4	Q5TGY1	634 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	DRICH1	Q6PGQ1	229 aa	Predicted RBP	12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	RNF135	Q8IUD6	432 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	TP53INP2	Q8IXH6	220 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	UBALD2	Q8IYN6	164 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	GJD3	Q8N144	294 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	PRELID2	Q8N945	189 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	CCDC89	Q8N998	374 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	SPATA4	Q8NEY3	305 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	OR52K2	Q8NGK3	314 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	CCDC26	Q8TAB7	109 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	HTR3C	Q8WXA8	447 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	LGMN	Q99538	433 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	TMEM121	Q9BTD3	319 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	CINP	Q9BW66	212 aa	Predicted RBP	12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	CARD6	Q9BX69	1037 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	RBM12	Q9NTZ6	932 aa	Known RBP	12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	VPS51	Q9UID3	782 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	CA14	Q9ULX7	337 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	TTLL3	Q9Y4R7	772 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	ATG2B	Q96BY7	2078 aa		12.14	□□□□□ -0.47
DDB1-223	ENST00000543658	BCLAF3	A2AJT9	711 aa	Known RBP	12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	PDE2A	O00408	941 aa	Predicted RBP	12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	MATN3	O15232	486 aa		12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	TIMM44	O43615	452 aa		12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	SNAP91	O60641	907 aa		12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	MAFK	O60675	156 aa		12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	PRAMEF11	O60813	436 aa		12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	ECEL1	O95672	775 aa		12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	IFNB1	P01574	187 aa		12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	ITGAV	P06756	1048 aa		12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	SRPRA	P08240	638 aa	Known RBP	12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	CISD3	P0C7P0	127 aa		12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	RBL1	P28749	1068 aa		12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	STIP1	P31948	543 aa	Known RBP	12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	COIL	P38432	576 aa	Predicted RBP	12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	RENBP	P51606	427 aa		12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	ECT2L	Q008S8	904 aa		12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	PRKCQ	Q04759	706 aa		12.13	□□□□□ -0.47
DDB1-223	ENST00000543658	SLC20A2	Q08357	652 aa		12.13	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms