RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 ALKBH8Q96BT7 664 aaKnown RBP4.95□□□□□ -1.62
LIMS1-214ENST00000542845 GRAMD1AQ96CP6 724 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 CALML4Q96GE6 196 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 FIZ1Q96SL8 496 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 CGRRF1Q99675 332 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 CBWD1Q9BRT8 395 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 TM6SF1Q9BZW5 370 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 ADNPQ9H2P0 1102 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 FOXP1Q9H334 677 aaPredicted RBP4.95□□□□□ -1.62
LIMS1-214ENST00000542845 ZNF395Q9H8N7 513 aaPredicted RBP4.95□□□□□ -1.62
LIMS1-214ENST00000542845 NEUROD4Q9HD90 331 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 CASS4Q9NQ75 786 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 ARHGAP20Q9P2F6 1191 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 TJP2Q9UDY2 1190 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 STK17AQ9UEE5 414 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 IPO11Q9UI26 975 aaKnown RBP4.95□□□□□ -1.62
LIMS1-214ENST00000542845 CYTH4Q9UIA0 394 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 FZD4Q9ULV1 537 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 SCML2Q9UQR0 700 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 U3KQA8 63 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 NOTCH2Q04721 2471 aa4.95□□□□□ -1.62
LIMS1-214ENST00000542845 PRAMEF33A0A0G2JMD5 474 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 GOLGA6L7A0A1B0GV03 622 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 FAM92AA1XBS5 289 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 TTC24A2A3L6 582 aaPredicted RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 A6NHS1 94 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 ZNF233A6NK53 670 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 BNIP3LO60238 219 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 PRAMEF10O60809 474 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 DIAPH2O60879 1101 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 TBL1XO60907 577 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 RNGTTO60942 597 aaKnown RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 TCEA3O75764 348 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 RNF224P0DH78 156 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 ZNF18P17022 549 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 CDK11BP21127 795 aaKnown RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 C5AR1P21730 350 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 HOXD9P28356 352 aaPredicted RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 GRNP28799 593 aaKnown RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 SLC19A1P41440 591 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 PTGIRP43119 386 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 CTSOP43234 321 aaPredicted RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 HARS2P49590 506 aaKnown RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 TOB1P50616 345 aaPredicted RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 ZNF131P52739 623 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 METAP1P53582 386 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 OXCT1P55809 520 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 WDR4P57081 412 aaKnown RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 HNRNPKP61978 463 aaKnown RBP eCLIP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 OVGP1Q12889 678 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 C1orf61Q13536 156 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 NR0B2Q15466 257 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 TCEA2Q15560 299 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 HIF1AQ16665 826 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 HNRNPA1L2Q32P51 320 aaKnown RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 SETMARQ53H47 684 aaPredicted RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 HYIQ5T013 277 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 C9orf64Q5T6V5 341 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 RNF219Q5W0B1 726 aaPredicted RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 ZCCHC8Q6NZY4 707 aaKnown RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 RFWD3Q6PCD5 774 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 B3GNT8Q7Z7M8 397 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 SCD5Q86SK9 330 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 TADA2BQ86TJ2 420 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 ZC3H18Q86VM9 953 aaKnown RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 HEATR4Q86WZ0 1026 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 FAM114A1Q8IWE2 563 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 FUKQ8N0W3 1084 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 GPD1LQ8N335 351 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 C12orf29Q8N999 325 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 TEX19Q8NA77 164 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 WFDC5Q8TCV5 224 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 LMX1AQ8TE12 382 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 USP7Q93009 1102 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 CCDC127Q96BQ5 260 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 MOCOSQ96EN8 888 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 ABHD17AQ96GS6 310 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 TNIP3Q96KP6 325 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 RPL10LQ96L21 214 aaKnown RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 NOX5Q96PH1 765 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 GFM1Q96RP9 751 aaKnown RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 IL12RB2Q99665 862 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 CCDC3Q9BQI4 270 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 DUSP23Q9BVJ7 150 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 STRADBQ9C0K7 418 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 SMYD3Q9H7B4 428 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 USP29Q9HBJ7 922 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 PREBQ9HCU5 417 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 KLHL11Q9NVR0 708 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 MARCH2Q9P0N8 246 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 GULP1Q9UBP9 304 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 SLCO3A1Q9UIG8 710 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 ITGB1BP2Q9UKP3 347 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 STRIP2Q9ULQ0 834 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 DAAM1Q9Y4D1 1078 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 PCDHGA7Q9Y5G6 932 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 NYNRINQ9P2P1 1898 aaKnown RBP4.94□□□□□ -1.62
LIMS1-214ENST00000542845 UBE4BO95155 1302 aa4.94□□□□□ -1.62
LIMS1-214ENST00000542845 USP9YO00507 2555 aaPredicted RBP4.93□□□□□ -1.62
LIMS1-214ENST00000542845 EDDM13A0A1B0GTR0 161 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms