RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 hCG_2039718K7EN88 272 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 ZNF195O14628 629 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 ABCB7O75027 752 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 UGT2B11O75310 529 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 BMP3P12645 472 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 ETS1P14921 441 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 MX2P20592 715 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 CNTFP26441 200 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 HARS2P49590 506 aaKnown RBP12.65□□□□□ -0.39
USP3-203ENST00000538686 TAF5Q15542 800 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 ZFP69Q49AA0 526 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 LDLRAP1Q5SW96 308 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 AGAP6Q5VW22 663 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 EPGNQ6UW88 154 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 IFNL2Q8IZJ0 200 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 SCML4Q8N228 414 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 CNTD1Q8N815 330 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 ANKRD53Q8N9V6 530 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 GALNT11Q8NCW6 608 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 SNX19Q92543 992 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 HAS1Q92839 578 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 AGAP4Q96P64 663 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 TMEM246Q9BRR3 403 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 WDR83Q9BRX9 315 aaKnown RBP12.65□□□□□ -0.39
USP3-203ENST00000538686 KCNN2Q9H2S1 579 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 LIN7BQ9HAP6 207 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 DMAC2Q9NW81 257 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 POLHQ9Y253 713 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 RWDD3Q9Y3V2 267 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 ARPC4-TTLL3A0A0A6YYG9 625 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 PMM2O15305 246 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 ZBTB14O43829 449 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 UPK1BO75841 260 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 SEC24DO94855 1032 aaPredicted RBP12.64□□□□□ -0.39
USP3-203ENST00000538686 KCNH1O95259 989 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 FGF3P11487 239 aaPredicted RBP12.64□□□□□ -0.39
USP3-203ENST00000538686 GLDCP23378 1020 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 HK2P52789 917 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 MFAP3P55082 362 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 PRKCEQ02156 737 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 VPS72Q15906 364 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 SNAP47Q5SQN1 464 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 CRTC3Q6UUV7 619 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 TIFABQ6ZNK6 161 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 ZCCHC23Q6ZST2 131 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 ADGRA1Q86SQ6 560 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 SLCO6A1Q86UG4 719 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 SLC9A9Q8IVB4 645 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 GALNT12Q8IXK2 581 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 NDUFAF2Q8N183 169 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 ZFP90Q8TF47 636 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 PHF10Q8WUB8 498 aaKnown RBP12.64□□□□□ -0.39
USP3-203ENST00000538686 FAM89AQ96GI7 184 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 MBOAT7Q96N66 472 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 EYA3Q99504 573 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 EHMT1Q9H9B1 1298 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 DDX28Q9NUL7 540 aaKnown RBP12.64□□□□□ -0.39
USP3-203ENST00000538686 FBXO28Q9NVF7 368 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 VPS4AQ9UN37 437 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 PLIN4Q96Q06 1357 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 MAST2Q6P0Q8 1798 aa12.64□□□□□ -0.39
USP3-203ENST00000538686 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 ENTPD3O75355 529 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 AVILO75366 819 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 CSPG5O95196 566 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 PRLP01236 227 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 IFNB1P01574 187 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 PCNAP12004 261 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 CYP11B1P15538 503 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 GSTM2P28161 218 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 PKNOX1P55347 436 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 BNIP2Q12982 314 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 FAM205BPQ63HN1 556 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 PPP1R18Q6NYC8 613 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 PODNQ7Z5L7 613 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 LINC00523Q86TU6 105 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 ARHGEF19Q8IW93 802 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 BEND7Q8N7W2 519 aaPredicted RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 OR6Q1Q8NGQ2 317 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 PPWD1Q96BP3 646 aaKnown RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 GIMAP5Q96F15 307 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 RUSC1Q9BVN2 902 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 MTMR12Q9C0I1 747 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 TMEM117Q9H0C3 514 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 UPF3AQ9H1J1 476 aaKnown RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 MRPL47Q9HD33 250 aaKnown RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 NDFIP2Q9NV92 336 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 PACSIN3Q9UKS6 424 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 RAD54BQ9Y620 910 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 A0A1W2PQ72 361 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 C9IYK1 514 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 TK2O00142 265 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 SOCS2O14508 198 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 CFLARO15519 480 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 SGTAO43765 313 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 GLRA3O75311 464 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 BCAS1O75363 584 aaPredicted RBP12.63□□□□□ -0.39
USP3-203ENST00000538686 B3GALNT1O75752 331 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 VAPBO95292 243 aa12.63□□□□□ -0.39
USP3-203ENST00000538686 NDST3O95803 873 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms