RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 RENBPP51606 427 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 GAD2Q05329 585 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 HNRNPDQ14103 355 aaKnown RBP21.47■■□□□ 1.03
VPS28-208ENST00000527797 CBX2Q14781 532 aaPredicted RBP21.47■■□□□ 1.03
VPS28-208ENST00000527797 ARID3BQ8IVW6 561 aaPredicted RBP21.47■■□□□ 1.03
VPS28-208ENST00000527797 PDIK1LQ8N165 341 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 CARNMT1Q8N4J0 409 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 DDI1Q8WTU0 396 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 SAYSD1Q9NPB0 183 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 EIF2B3Q9NR50 452 aaKnown RBP21.47■■□□□ 1.03
VPS28-208ENST00000527797 RBM22Q9NW64 420 aaKnown RBP eCLIP21.47■■□□□ 1.03
VPS28-208ENST00000527797 DENND4CQ5VZ89 1909 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 GOLGA6BA6NDN3 693 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 F5H423 210 aaPredicted RBP21.46■■□□□ 1.03
VPS28-208ENST00000527797 EIF3HO15372 352 aaKnown RBP eCLIP21.46■■□□□ 1.03
VPS28-208ENST00000527797 LUC7L3O95232 432 aaKnown RBP21.46■■□□□ 1.03
VPS28-208ENST00000527797 PRAMEF12O95522 483 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 GLP2RO95838 553 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 CD68P34810 354 aaPredicted RBP21.46■■□□□ 1.03
VPS28-208ENST00000527797 ETFBP38117 255 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 MAGEA4P43358 317 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 RGS19P49795 217 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 SARNPP82979 210 aaKnown RBP21.46■■□□□ 1.03
VPS28-208ENST00000527797 CDK16Q00536 496 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 PRPSAP1Q14558 356 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 MPP7Q5T2T1 576 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 IL31Q6EBC2 164 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 ANKRD54Q6NXT1 300 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 ZNF783Q6ZMS7 281 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 GPR149Q86SP6 731 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 IQCKQ8N0W5 287 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 CNTD1Q8N815 330 aa21.46■■□□□ 1.03
VPS28-208ENST00000527797 CDC42EP4Q9H3Q1 356 aaKnown RBP21.46■■□□□ 1.03
VPS28-208ENST00000527797 A0A0D9SEW6 157 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 PRAMEF11O60813 436 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 PEX11BO96011 259 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 CYBBP04839 570 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 NFKB1P19838 968 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 FSHRP23945 695 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 WEE1P30291 646 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 PDIA2Q13087 525 aaKnown RBP21.45■■□□□ 1.02
VPS28-208ENST00000527797 ZNF77Q15935 545 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 FNBP1LQ5T0N5 605 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 MARC1Q5VT66 337 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 CCDC117Q8IWD4 279 aaPredicted RBP21.45■■□□□ 1.02
VPS28-208ENST00000527797 PDCD7Q8N8D1 485 aaKnown RBP21.45■■□□□ 1.02
VPS28-208ENST00000527797 OR7D4Q8NG98 312 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 OR52K2Q8NGK3 314 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 PABPC5Q96DU9 382 aaKnown RBP21.45■■□□□ 1.02
VPS28-208ENST00000527797 SPON2Q9BUD6 331 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 APOL5Q9BWW9 433 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 LMCD1Q9NZU5 365 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 TBC1D14Q9P2M4 693 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 PLAAQ9Y263 795 aa21.45■■□□□ 1.02
VPS28-208ENST00000527797 ALOX15BO15296 676 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 LINC01565O15544 149 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 OXCT1P55809 520 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 USP4Q13107 963 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 CDH18Q13634 790 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 RNF219Q5W0B1 726 aaPredicted RBP21.44■■□□□ 1.02
VPS28-208ENST00000527797 DENND2CQ68D51 928 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 CXorf57Q6NSI4 855 aaKnown RBP21.44■■□□□ 1.02
VPS28-208ENST00000527797 POTEHQ6S545 545 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 TPGS1Q6ZTW0 290 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 SERPINB12Q96P63 405 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 ZIM3Q96PE6 472 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 RUFY1Q96T51 708 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 MUC3BQ9H195 1237 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 KIF9Q9HAQ2 790 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 GLOD4Q9HC38 313 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 ATP13A1Q9HD20 1204 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 ATG2AQ2TAZ0 1938 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 CHD9Q3L8U1 2897 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 DOCK4Q8N1I0 1966 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 E7ESA3 106 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 RIPK2O43353 540 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 KDELR3O43731 214 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 TTC4O95801 387 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 FAM193AP78312 1265 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 GPS2Q13227 327 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 BBS9Q3SYG4 887 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 SYCE2Q6PIF2 218 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 ZBED8Q8IZ13 594 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 CELF5Q8N6W0 485 aaKnown RBP21.44■■□□□ 1.02
VPS28-208ENST00000527797 RIN3Q8TB24 985 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 ZNF599Q96NL3 588 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 PPP1R2P1Q96PQ5 205 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 EPB41L4BQ9H329 900 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 NINJ2Q9NZG7 142 aa21.44■■□□□ 1.02
VPS28-208ENST00000527797 GOLGA6CA6NDK9 693 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 ERI2A8K979 691 aaKnown RBP21.43■■□□□ 1.02
VPS28-208ENST00000527797 PSMD3O43242 534 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 CACNG3O60359 315 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 HLA-DQB2P05538 268 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 GOLGA6DP0CG33 693 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 HOXB8P17481 243 aaPredicted RBP21.43■■□□□ 1.02
VPS28-208ENST00000527797 HOXD9P28356 352 aaPredicted RBP21.43■■□□□ 1.02
VPS28-208ENST00000527797 SLC10A7Q0GE19 358 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 ADAM15Q13444 863 aa21.43■■□□□ 1.02
VPS28-208ENST00000527797 KYNUQ16719 465 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms