RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 GJB6O95452 261 aa21.13■□□□□ 0.97
VPS28-206ENST00000526734 RHOQP17081 205 aa21.13■□□□□ 0.97
VPS28-206ENST00000526734 GOT1P17174 413 aa21.13■□□□□ 0.97
VPS28-206ENST00000526734 CSRP1P21291 193 aaKnown RBP21.13■□□□□ 0.97
VPS28-206ENST00000526734 PSMD8P48556 350 aa21.13■□□□□ 0.97
VPS28-206ENST00000526734 UBASH3AP57075 661 aa21.13■□□□□ 0.97
VPS28-206ENST00000526734 SLC20A2Q08357 652 aa21.13■□□□□ 0.97
VPS28-206ENST00000526734 DLG2Q15700 870 aa21.13■□□□□ 0.97
VPS28-206ENST00000526734 HDDC3Q8N4P3 179 aa21.13■□□□□ 0.97
VPS28-206ENST00000526734 TBC1D31Q96DN5 1066 aa21.13■□□□□ 0.97
VPS28-206ENST00000526734 TRIM11Q96F44 468 aa21.13■□□□□ 0.97
VPS28-206ENST00000526734 MIR1-1HGQ9H1L0 117 aa21.13■□□□□ 0.97
VPS28-206ENST00000526734 HAUS4Q9H6D7 363 aa21.13■□□□□ 0.97
VPS28-206ENST00000526734 C6orf106Q9H6K1 298 aaPredicted RBP21.13■□□□□ 0.97
VPS28-206ENST00000526734 BZW2Q9Y6E2 419 aaKnown RBP21.13■□□□□ 0.97
VPS28-206ENST00000526734 CEP192Q8TEP8 1941 aa21.13■□□□□ 0.97
VPS28-206ENST00000526734 MCF2LO15068 1137 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 SLC7A4O43246 635 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 CCP110O43303 1012 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 RNASEH2AO75792 299 aaKnown RBP21.12■□□□□ 0.97
VPS28-206ENST00000526734 IL1BP01584 269 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 TPM3P06753 285 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 SRCP12931 536 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 RRM1P23921 792 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 MAOBP27338 520 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 MAPK8P45983 427 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 GNA12Q03113 381 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 EFHC2Q5JST6 749 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 ARTNQ5T4W7 220 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 SH3PXD2AQ5TCZ1 1133 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 KIAA0895LQ68EN5 471 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 IL27RAQ6UWB1 636 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 SLFN11Q7Z7L1 901 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 ZCCHC9Q8N567 271 aaKnown RBP21.12■□□□□ 0.97
VPS28-206ENST00000526734 ATP11CQ8NB49 1132 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 OR2T34Q8NGX1 318 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 SNX19Q92543 992 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 SYN2Q92777 582 aaPredicted RBP21.12■□□□□ 0.97
VPS28-206ENST00000526734 GTPBP2Q9BX10 602 aaKnown RBP21.12■□□□□ 0.97
VPS28-206ENST00000526734 DNAAF2Q9NVR5 837 aaKnown RBP21.12■□□□□ 0.97
VPS28-206ENST00000526734 TMEM248Q9NWD8 314 aa21.12■□□□□ 0.97
VPS28-206ENST00000526734 EIF2B4Q9UI10 523 aaKnown RBP21.12■□□□□ 0.97
VPS28-206ENST00000526734 A0A1W2PP55 124 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 OPHN1O60890 802 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 PLEKP08567 350 aaPredicted RBP21.11■□□□□ 0.97
VPS28-206ENST00000526734 ADRB1P08588 477 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 CD27P26842 260 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 L1CAMP32004 1257 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 PBX1P40424 430 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 AFF3P51826 1226 aaKnown RBP21.11■□□□□ 0.97
VPS28-206ENST00000526734 GEMIN4P57678 1058 aaKnown RBP21.11■□□□□ 0.97
VPS28-206ENST00000526734 SLC14A1Q13336 389 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 TEAD4Q15561 434 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 PLEKHA7Q6IQ23 1121 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 RWDD4Q6NW29 188 aaKnown RBP21.11■□□□□ 0.97
VPS28-206ENST00000526734 ZNF571Q7Z3V5 609 aaPredicted RBP21.11■□□□□ 0.97
VPS28-206ENST00000526734 MINDY1Q8N5J2 469 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 FAM131CQ96AQ9 280 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 CEP44Q9C0F1 390 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 KDM4CQ9H3R0 1056 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 ATP13A1Q9HD20 1204 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 SCINQ9Y6U3 715 aa21.11■□□□□ 0.97
VPS28-206ENST00000526734 A0A0D9SEW6 157 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 EIF3CLB5ME19 914 aaKnown RBP21.1■□□□□ 0.97
VPS28-206ENST00000526734 SNAP91O60641 907 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 LRIG2O94898 1065 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 FSBPO95073 299 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 KCNK5O95279 499 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 MYBL1P10243 752 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 VAV1P15498 845 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 HTR7P34969 479 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 CCR5P51681 352 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 GALCP54803 685 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 RPL7AP62424 266 aaKnown RBP21.1■□□□□ 0.97
VPS28-206ENST00000526734 CCDC15Q0P6D6 951 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 UAP1L1Q3KQV9 507 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 RAB6CQ53S08 254 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 E4F1Q66K89 784 aaPredicted RBP21.1■□□□□ 0.97
VPS28-206ENST00000526734 Q6ZVU0 165 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 VPS36Q86VN1 386 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 DRC7Q8IY82 874 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 CCDC185Q8N715 623 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 C1orf216Q8TAB5 229 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 BIRC7Q96CA5 298 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 EIF3CQ99613 913 aaKnown RBP21.1■□□□□ 0.97
VPS28-206ENST00000526734 NCAPGQ9BPX3 1015 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 RAB6CQ9H0N0 254 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 MAGEH1Q9H213 219 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 NEUROG2Q9H2A3 272 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 SLC32A1Q9H598 525 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 TAS2R14Q9NYV8 317 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 SERGEFQ9UGK8 458 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 PPM1HQ9ULR3 514 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 GON4LQ3T8J9 2241 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 PCDH15Q96QU1 1955 aa21.1■□□□□ 0.97
VPS28-206ENST00000526734 CBX4O00257 560 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 RTN2O75298 545 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 CEACAM1P13688 526 aa21.09■□□□□ 0.97
VPS28-206ENST00000526734 RECQLP46063 649 aaPredicted RBP21.09■□□□□ 0.97
VPS28-206ENST00000526734 GRIA4P48058 902 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms