RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 PROX2Q3B8N5 592 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 TBC1D25Q3MII6 688 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 HS1BP3Q53T59 392 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 ARSIQ5FYB1 569 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 FAM46CQ5VWP2 391 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 SEL1L3Q68CR1 1132 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 LINGO4Q6UY18 593 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 ERICH1Q86X53 443 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 PASD1Q8IV76 773 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 ZNF557Q8N988 423 aaPredicted RBP6.76□□□□□ -1.33
CD44-221ENST00000526000 ATP11CQ8NB49 1132 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 OR13H1Q8NG92 308 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 LMO3Q8TAP4 145 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 SMARCE1Q969G3 411 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 ARRDC3Q96B67 414 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 RPRD1AQ96P16 312 aaPredicted RBP6.76□□□□□ -1.33
CD44-221ENST00000526000 SPAG5Q96R06 1193 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 FEM1AQ9BSK4 669 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 CRACR2AQ9BSW2 395 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 SPON2Q9BUD6 331 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 ABCG4Q9H172 646 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 MUC3BQ9H195 1237 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 FAM204AQ9H8W3 233 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 ERVMER34-1Q9H9K5 563 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 METTL14Q9HCE5 456 aaKnown RBP6.76□□□□□ -1.33
CD44-221ENST00000526000 TMPRSS4Q9NRS4 437 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 DDIT4Q9NX09 232 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 DNAJC28Q9NX36 388 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 SLC25A13Q9UJS0 675 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 VPS28Q9UK41 221 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 PPM1HQ9ULR3 514 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 ACTL7AQ9Y615 435 aa6.76□□□□□ -1.33
CD44-221ENST00000526000 ARID1BQ8NFD5 2236 aaPredicted RBP6.76□□□□□ -1.33
CD44-221ENST00000526000 IGSF10Q6WRI0 2623 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 A0A1B0GVM2 712 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 PMS2P1A4D2B8 440 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 C1QTNF3-AMACRE9PGA6 284 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 SCAMP1O15126 338 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 YKT6O15498 198 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 LATO43561 262 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 PLRG1O43660 514 aaKnown RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 MAGEC1O60732 1142 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 CSO75390 466 aaKnown RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 ADCY5O95622 1261 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 PAK4O96013 591 aaPredicted RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 CTSLP07711 333 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 C7P10643 843 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 CDK4P11802 303 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 ACP1P24666 158 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 CHRNA3P32297 505 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 PPP1R2P41236 205 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 ACADSBP45954 432 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 SULT2A1Q06520 285 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 KCNMA1Q12791 1236 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 ZNF211Q13398 564 aaPredicted RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 C1orf61Q13536 156 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 AUHQ13825 339 aaKnown RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 ELAVL3Q14576 367 aaKnown RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 ARID5BQ14865 1188 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 DRAP1Q14919 205 aaPredicted RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 STILQ15468 1287 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 CDKN3Q16667 212 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 SETMARQ53H47 684 aaPredicted RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 ALFQ53S48 1182 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 AGBL4Q5VU57 503 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 SFMBT2Q5VUG0 894 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 KIAA1614Q5VZ46 1190 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 CXorf57Q6NSI4 855 aaKnown RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 Q6ZSR6 202 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 PTAR1Q7Z6K3 402 aaPredicted RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 DSG4Q86SJ6 1040 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 OXR1Q8N573 874 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 WDTC1Q8N5D0 677 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 DCBLD1Q8N8Z6 715 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 KDM1BQ8NB78 822 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 OR7D4Q8NG98 312 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 SNIP1Q8TAD8 396 aaKnown RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 GRIN3AQ8TCU5 1115 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 NELFBQ8WX92 580 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 ZNF606Q8WXB4 792 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 ALG14Q96F25 216 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 VCPIP1Q96JH7 1222 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 BTN2A3PQ96KV6 586 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 APOLD1Q96LR9 279 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 PRMT1Q99873 361 aaKnown RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 SRRTQ9BXP5 876 aaKnown RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 SLC4A5Q9BY07 1137 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 INTS2Q9H0H0 1204 aaKnown RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 THAP9Q9H5L6 903 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 SYNDIG1Q9H7V2 258 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 POPDC2Q9HBU9 364 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 PLCB1Q9NQ66 1216 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 KLHL11Q9NVR0 708 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.75□□□□□ -1.33
CD44-221ENST00000526000 RMND1Q9NWS8 449 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 MPP6Q9NZW5 540 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 IPO11Q9UI26 975 aaKnown RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 MAN1B1Q9UKM7 699 aa6.75□□□□□ -1.33
CD44-221ENST00000526000 ZFR2Q9UPR6 939 aaKnown RBP6.75□□□□□ -1.33
CD44-221ENST00000526000 HS3ST4Q9Y661 456 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms