RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 HOXC6P09630 235 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 CHRM3P20309 590 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 NEK3P51956 506 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 PAN2Q504Q3 1202 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 NEPROQ6NW34 567 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 IGDCC3Q8IVU1 814 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 ASPSCR1Q9BZE9 553 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 PRKD2Q9BZL6 878 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 OR12D3Q9UGF7 316 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 NDUFAF1Q9Y375 327 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 TEX264Q9Y6I9 313 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 IRS2Q9Y4H2 1338 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 TRAFD1O14545 582 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 KLF11O14901 512 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 MFSD11O43934 449 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 LTFP02788 710 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 ODC1P11926 461 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 FCGR1AP12314 374 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 ATP5F1P24539 256 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 GPD2P43304 727 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 SERPINB10P48595 397 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 NUMBP49757 651 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 AQP4P55087 323 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 KCNJ11Q14654 390 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 CERCAMQ5T4B2 595 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 KIAA1841Q6NSI8 718 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 RDH11Q8TC12 318 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 FAM162AQ96A26 154 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 GPR20Q99678 358 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 PIF1Q9H611 641 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 LRFN2Q9ULH4 789 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 POMPQ9Y244 141 aa8.55□□□□□ -1.04
LIMCH1-216ENST00000512820 A0A087WXM4 84 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 A0A087X1B8 175 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 KDM1AO60341 852 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 DLDP09622 509 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 CPB1P15086 417 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 NPR3P17342 541 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 PTPN1P18031 435 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 ICAM3P32942 547 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 MSLNQ13421 630 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 METTL21CQ5VZV1 264 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 TLDC1Q6P9B6 456 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 DSELQ8IZU8 1212 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 MPP5Q8N3R9 675 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 SEPHS2Q99611 448 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 NPAS2Q99743 824 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 MID1IP1Q9NPA3 183 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 HMGXB4Q9UGU5 601 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 SEPT3Q9UH03 358 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 AFF4Q9UHB7 1163 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 PPM1HQ9ULR3 514 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 PPP2R3BQ9Y5P8 575 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 GRIN3BO60391 1043 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 HNRNPLP14866 589 aaKnown RBP eCLIP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 RAD51Q06609 339 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 FRG1Q14331 258 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 CHADLQ6NUI6 762 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 PIWIL4Q7Z3Z4 852 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 AMIGO2Q86SJ2 522 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 ADCK1Q86TW2 530 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF483Q8TF39 744 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 GTF3C2Q8WUA4 911 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 CEP19Q96LK0 163 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 THUMPD3Q9BV44 507 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 KATNAL1Q9BW62 490 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 CHCHD3Q9NX63 227 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 MYH3P11055 1940 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 M0R3G1 203 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 MSCO60682 206 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 SNRPB2P08579 225 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 CCR1P32246 355 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 GRIA1P42261 906 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 PSEN1P49768 467 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 RAP1GDS1P52306 607 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 RAB10P61026 200 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 CHRNB3Q05901 458 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 CTBP1Q13363 440 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 PRMT9Q6P2P2 845 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 STRADAQ7RTN6 431 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 TAS1R3Q7RTX0 852 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF781Q8N8C0 355 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 ADCY4Q8NFM4 1077 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 NAT14Q8WUY8 206 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 DNAJB3Q8WWF6 145 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 LZICQ8WZA0 190 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 SKA1Q96BD8 255 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 TUBGCP5Q96RT8 1024 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 KCTD14Q9BQ13 255 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 PAIP1Q9H074 479 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF229Q9UJW7 825 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 FARP1Q9Y4F1 1045 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 H0Y626 953 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 ITM2AO43736 263 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 TRIM16O95361 564 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 GLP2RO95838 553 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 THP07101 528 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 GRIA3P42263 894 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 HK2P52789 917 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 MAPRE1Q15691 268 aaKnown RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms