RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 CCDC15Q0P6D6 951 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 TCF15Q12870 199 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 MMRN1Q13201 1228 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 CAMK2GQ13555 558 aaPredicted RBP9.35□□□□□ -0.91
NUP54-207ENST00000508583 CKAP5Q14008 2032 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 DPYSQ14117 519 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 ELAVL3Q14576 367 aaKnown RBP9.35□□□□□ -0.91
NUP54-207ENST00000508583 PTPRNQ16849 979 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 ACCSLQ4AC99 568 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 TMCO4Q5TGY1 634 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 ANO7Q6IWH7 933 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 PKN3Q6P5Z2 889 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 RASSF3Q86WH2 238 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 MAML2Q8IZL2 1156 aaPredicted RBP9.35□□□□□ -0.91
NUP54-207ENST00000508583 ATP11CQ8NB49 1132 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 ZBTB44Q8NCP5 570 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 ACRBPQ8NEB7 543 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 OR2T3Q8NH03 318 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.35□□□□□ -0.91
NUP54-207ENST00000508583 NSMCE1Q8WV22 266 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 HMGB4Q8WW32 186 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 SORCS1Q8WY21 1168 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 PRCCQ92733 491 aaPredicted RBP9.35□□□□□ -0.91
NUP54-207ENST00000508583 NELL1Q92832 810 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 ALG14Q96F25 216 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 ZNF830Q96NB3 372 aaPredicted RBP9.35□□□□□ -0.91
NUP54-207ENST00000508583 CSPG4P5Q96PW8 444 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 MAK16Q9BXY0 300 aaKnown RBP9.35□□□□□ -0.91
NUP54-207ENST00000508583 ACE2Q9BYF1 805 aaPredicted RBP9.35□□□□□ -0.91
NUP54-207ENST00000508583 GPATCH2LQ9NWQ4 482 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 CWC15Q9P013 229 aaKnown RBP9.35□□□□□ -0.91
NUP54-207ENST00000508583 ZNF212Q9UDV6 495 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 INTS6Q9UL03 887 aaKnown RBP9.35□□□□□ -0.91
NUP54-207ENST00000508583 RAB23Q9ULC3 237 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 SCML1Q9UN30 329 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 NEU3Q9UQ49 428 aa9.35□□□□□ -0.91
NUP54-207ENST00000508583 MUC6Q6W4X9 2439 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 CHD5Q8TDI0 1954 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 A0A0D9SEW6 157 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 A0A1W2PQF6 199 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 CCDC66A2RUB6 948 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 LRRD1A4D1F6 860 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 RASA4BC9J798 803 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 ALOX15BO15296 676 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 RASA4O43374 803 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 KDELR3O43731 214 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 RPP40O75818 363 aaKnown RBP9.34□□□□□ -0.91
NUP54-207ENST00000508583 KRT1P04264 644 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 TDGF1P13385 188 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 ERCC2P18074 760 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 MX2P20592 715 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 COMTP21964 271 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 OXTRP30559 389 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 WASP42768 502 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 SERPINH1P50454 418 aaKnown RBP9.34□□□□□ -0.91
NUP54-207ENST00000508583 RFTN1Q14699 578 aaPredicted RBP9.34□□□□□ -0.91
NUP54-207ENST00000508583 CA9Q16790 459 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 FAM46CQ5VWP2 391 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 DAB2IPQ5VWQ8 1189 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 ZNF776Q68DI1 518 aaPredicted RBP9.34□□□□□ -0.91
NUP54-207ENST00000508583 HEATR6Q6AI08 1181 aaKnown RBP9.34□□□□□ -0.91
NUP54-207ENST00000508583 TSSK4Q6SA08 328 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 TMEM92Q6UXU6 159 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 ZNF662Q6ZS27 426 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 BZW1Q7L1Q6 419 aaKnown RBP9.34□□□□□ -0.91
NUP54-207ENST00000508583 BBS5Q8N3I7 341 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 SH2D3CQ8N5H7 860 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 PCDH20Q8N6Y1 951 aaKnown RBP9.34□□□□□ -0.91
NUP54-207ENST00000508583 UBL4BQ8N7F7 174 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 MDGA1Q8NFP4 955 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 OR7D4Q8NG98 312 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 TPCN2Q8NHX9 752 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 FAM71BQ8TC56 605 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 KIAA1524Q8TCG1 905 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 OR8D1Q8WZ84 308 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 ARHGEF2Q92974 986 aaKnown RBP9.34□□□□□ -0.91
NUP54-207ENST00000508583 ISG20Q96AZ6 181 aaKnown RBP9.34□□□□□ -0.91
NUP54-207ENST00000508583 SIPA1Q96FS4 1042 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 RBM41Q96IZ5 413 aaKnown RBP9.34□□□□□ -0.91
NUP54-207ENST00000508583 ALS2CR12Q96Q35 445 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 ACOX2Q99424 681 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 PCDH18Q9HCL0 1135 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 C2orf42Q9NWW7 574 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 HCN2Q9UL51 889 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 REXO2Q9Y3B8 237 aaKnown RBP9.34□□□□□ -0.91
NUP54-207ENST00000508583 RAD54BQ9Y620 910 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 ADGRG1Q9Y653 693 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 ALG6Q9Y672 507 aa9.34□□□□□ -0.91
NUP54-207ENST00000508583 MUC22E2RYF6 1773 aaPredicted RBP9.33□□□□□ -0.92
NUP54-207ENST00000508583 MACROD2A1Z1Q3 448 aa9.33□□□□□ -0.92
NUP54-207ENST00000508583 MIF4GDA9UHW6 222 aaKnown RBP9.33□□□□□ -0.92
NUP54-207ENST00000508583 C1QTNF3-AMACRE9PGA6 284 aa9.33□□□□□ -0.92
NUP54-207ENST00000508583 DCLK1O15075 740 aa9.33□□□□□ -0.92
NUP54-207ENST00000508583 BUB1O43683 1085 aa9.33□□□□□ -0.92
NUP54-207ENST00000508583 ZRANB2O95218 330 aaKnown RBP eCLIP9.33□□□□□ -0.92
NUP54-207ENST00000508583 ADH1BP00325 375 aa9.33□□□□□ -0.92
NUP54-207ENST00000508583 DNTTP04053 509 aa9.33□□□□□ -0.92
NUP54-207ENST00000508583 HLA-EP13747 358 aa9.33□□□□□ -0.92
NUP54-207ENST00000508583 TCF4P15884 667 aa9.33□□□□□ -0.92
NUP54-207ENST00000508583 GABRG2P18507 467 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms