RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 QKIQ96PU8 341 aaKnown RBP eCLIP7.37□□□□□ -1.23
NUP54-204ENST00000506098 XPO6Q96QU8 1125 aaKnown RBP7.37□□□□□ -1.23
NUP54-204ENST00000506098 FEM1AQ9BSK4 669 aa7.37□□□□□ -1.23
NUP54-204ENST00000506098 KCNK12Q9HB15 430 aa7.37□□□□□ -1.23
NUP54-204ENST00000506098 USP29Q9HBJ7 922 aa7.37□□□□□ -1.23
NUP54-204ENST00000506098 PRDM6Q9NQX0 595 aa7.37□□□□□ -1.23
NUP54-204ENST00000506098 PLK2Q9NYY3 685 aa7.37□□□□□ -1.23
NUP54-204ENST00000506098 LIMD1Q9UGP4 676 aa7.37□□□□□ -1.23
NUP54-204ENST00000506098 CLEC4EQ9ULY5 219 aa7.37□□□□□ -1.23
NUP54-204ENST00000506098 NEU2Q9Y3R4 380 aa7.37□□□□□ -1.23
NUP54-204ENST00000506098 TP53BP1Q12888 1972 aaPredicted RBP7.37□□□□□ -1.23
NUP54-204ENST00000506098 UNC80Q8N2C7 3258 aa7.37□□□□□ -1.23
NUP54-204ENST00000506098 A0A0A0MRY4 1105 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 A0A0D9SEW6 157 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 ZSCAN5CA6NGD5 496 aaPredicted RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 BHMG1C9JSJ3 638 aaPredicted RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 H7C0C1 242 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 RIOK3O14730 519 aaKnown RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 MATN3O15232 486 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 MTSS1O43312 755 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 PRAMEF11O60813 436 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 ZMPSTE24O75844 475 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 SLU7O95391 586 aaKnown RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 PEX11BO96011 259 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 GLULP15104 373 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 MZF1P28698 734 aaPredicted RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 RBL1P28749 1068 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 HLA-FP30511 346 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 GJA4P35212 333 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 ACVRL1P37023 503 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 OPRD1P41143 372 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 PTGIRP43119 386 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 ATP5OP48047 213 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 KCNJ1P48048 391 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 GABPB1Q06547 395 aaPredicted RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 C2orf54Q08AI8 447 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 LMAN2Q12907 356 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 CDH18Q13634 790 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 DHX34Q14147 1143 aaKnown RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 PLEKHG6Q3KR16 790 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 ITPRIPL2Q3MIP1 535 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 GLE1Q53GS7 698 aaKnown RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 TMCO4Q5TGY1 634 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 RNF219Q5W0B1 726 aaPredicted RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 ASTLQ6HA08 431 aaPredicted RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 TIGD7Q6NT04 549 aaPredicted RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 DARS2Q6PI48 645 aaKnown RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 MAATS1Q7Z4T9 603 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 ZC3H18Q86VM9 953 aaKnown RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 CDKL3Q8IVW4 592 aaPredicted RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 CCDC117Q8IWD4 279 aaPredicted RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 CCDC13Q8IYE1 715 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 TEX26Q8N6G2 289 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 ALLCQ8N6M5 410 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 DCAF4L2Q8NA75 395 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 ST13P5Q8NFI4 369 aaPredicted RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 OR7D4Q8NG98 312 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 CCDC26Q8TAB7 109 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 WFIKKN2Q8TEU8 576 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 MAML1Q92585 1016 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 DNASE1L2Q92874 299 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 TTC17Q96AE7 1141 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 ACDQ96AP0 544 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 CHFRQ96EP1 664 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 CELF6Q96J87 481 aaKnown RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 ZNF599Q96NL3 588 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 KRT12Q99456 494 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 VAT1Q99536 393 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 LGMNQ99538 433 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 IL12RB2Q99665 862 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 FAM118BQ9BPY3 351 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 TMEM121Q9BTD3 319 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 DDX47Q9H0S4 455 aaKnown RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 BRD9Q9H8M2 597 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 PDFQ9HBH1 243 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 SLC2A4RGQ9NR83 387 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 GTSE1Q9NYZ3 720 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 THEGQ9P2T0 379 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 AMACRQ9UHK6 382 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 IPO11Q9UI26 975 aaKnown RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 GGA2Q9UJY4 613 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 INTS6Q9UL03 887 aaKnown RBP7.36□□□□□ -1.23
NUP54-204ENST00000506098 ZNF148Q9UQR1 794 aa7.36□□□□□ -1.23
NUP54-204ENST00000506098 ZFC3H1O60293 1989 aaKnown RBP7.35□□□□□ -1.23
NUP54-204ENST00000506098 SPAG17Q6Q759 2223 aa7.35□□□□□ -1.23
NUP54-204ENST00000506098 C5orf60A6NFR6 353 aa7.35□□□□□ -1.23
NUP54-204ENST00000506098 FAM187AA6NFU0 413 aa7.35□□□□□ -1.23
NUP54-204ENST00000506098 EFCAB8A8MWE9 144 aa7.35□□□□□ -1.23
NUP54-204ENST00000506098 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.35□□□□□ -1.23
NUP54-204ENST00000506098 J3KR12 359 aa7.35□□□□□ -1.23
NUP54-204ENST00000506098 DFFAO00273 331 aa7.35□□□□□ -1.23
NUP54-204ENST00000506098 TULP3O75386 442 aa7.35□□□□□ -1.23
NUP54-204ENST00000506098 GCATO75600 419 aa7.35□□□□□ -1.23
NUP54-204ENST00000506098 MAP3K6O95382 1288 aa7.35□□□□□ -1.23
NUP54-204ENST00000506098 CD160O95971 181 aa7.35□□□□□ -1.23
NUP54-204ENST00000506098 PABPC1P11940 636 aaKnown RBP7.35□□□□□ -1.23
NUP54-204ENST00000506098 VAV1P15498 845 aa7.35□□□□□ -1.23
NUP54-204ENST00000506098 SP100P23497 879 aaPredicted RBP7.35□□□□□ -1.23
NUP54-204ENST00000506098 CD70P32970 193 aa7.35□□□□□ -1.23
NUP54-204ENST00000506098 CSKP41240 450 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms