RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 NSMCE4AQ9NXX6 385 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 DCDC2Q9UHG0 476 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 SOX13Q9UN79 622 aa10.97□□□□□ -0.65
USP4-214ENST00000491791 DRGXA6NNA5 263 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 F8W810 466 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 UGT1A9O60656 530 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 SIN3BO75182 1162 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 ANXA9O76027 345 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 IGLV3-27P01718 113 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 CXCL10P02778 98 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 RHOQP17081 205 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 NFKB1P19838 968 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 ITGB8P26012 769 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 ADRA1AP35348 466 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 GP5P40197 560 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 NDST2P52849 883 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 RING1Q06587 406 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 CDH17Q12864 832 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 MTM1Q13496 603 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 SETDB1Q15047 1291 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 C5orf22Q49AR2 442 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 ANKRD20A4Q4UJ75 823 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 PAN2Q504Q3 1202 aaKnown RBP10.96□□□□□ -0.65
USP4-214ENST00000491791 SLC39A12Q504Y0 691 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 ZNF280DQ6N043 979 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 CDHR3Q6ZTQ4 885 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 FAM47EQ6ZV65 393 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 SUGP1Q8IWZ8 645 aaKnown RBP10.96□□□□□ -0.65
USP4-214ENST00000491791 FAM126BQ8IXS8 530 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 TMEM199Q8N511 208 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 DEPDC1BQ8WUY9 529 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 SPOCK2Q92563 424 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 SEPT8Q92599 483 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 PTPRN2Q92932 1015 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 FCRL2Q96LA5 508 aaPredicted RBP10.96□□□□□ -0.65
USP4-214ENST00000491791 FCRL3Q96P31 734 aaPredicted RBP10.96□□□□□ -0.65
USP4-214ENST00000491791 FAM193BQ96PV7 902 aaPredicted RBP10.96□□□□□ -0.65
USP4-214ENST00000491791 FAM111AQ96PZ2 611 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 TMEM237Q96Q45 408 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 TUBB6Q9BUF5 446 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 TTLL2Q9BWV7 592 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 TSSK1BQ9BXA7 367 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 MRPL9Q9BYD2 267 aaKnown RBP10.96□□□□□ -0.65
USP4-214ENST00000491791 TRIM55Q9BYV6 548 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 UGT1A7Q9HAW7 530 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 UGT1A10Q9HAW8 530 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 UGT1A8Q9HAW9 530 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 NMUR1Q9HB89 426 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 ARNT2Q9HBZ2 717 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 ARHGEF3Q9NR81 526 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 VANGL2Q9ULK5 521 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 CHKBQ9Y259 395 aa10.96□□□□□ -0.65
USP4-214ENST00000491791 MTO1Q9Y2Z2 717 aaKnown RBP10.96□□□□□ -0.65
USP4-214ENST00000491791 EYSQ5T1H1 3165 aa10.96□□□□□ -0.66
USP4-214ENST00000491791 TTC28Q96AY4 2481 aa10.96□□□□□ -0.66
USP4-214ENST00000491791 PRUNE2Q8WUY3 3088 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 A0A1W2PQH9 124 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 ARHGAP42A6NI28 874 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 H0YHG0 523 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 H7C4K7 107 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 GOLGA8RI6L899 631 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 NBNO60934 754 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 GLRA3O75311 464 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 SNNO75324 88 aaPredicted RBP10.95□□□□□ -0.66
USP4-214ENST00000491791 TADA2AO75478 443 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 PIAS1O75925 651 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 UNC5CO95185 931 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 GSRP00390 522 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 JCHAINP01591 159 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 ALDH2P05091 517 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 BPGMP07738 259 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 ITGA2BP08514 1039 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 DLDP09622 509 aaKnown RBP10.95□□□□□ -0.66
USP4-214ENST00000491791 SRGAP2BP0DMP2 458 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 HNRNPH1P31943 449 aaKnown RBP10.95□□□□□ -0.66
USP4-214ENST00000491791 KPNA1P52294 538 aaPredicted RBP10.95□□□□□ -0.66
USP4-214ENST00000491791 LIMK2P53671 638 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 SESN2P58004 480 aaPredicted RBP10.95□□□□□ -0.66
USP4-214ENST00000491791 OCRLQ01968 901 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 ILF2Q12905 390 aaKnown RBP10.95□□□□□ -0.66
USP4-214ENST00000491791 HNRNPDQ14103 355 aaKnown RBP10.95□□□□□ -0.66
USP4-214ENST00000491791 BTG3Q14201 252 aaPredicted RBP10.95□□□□□ -0.66
USP4-214ENST00000491791 TRIP4Q15650 581 aaPredicted RBP10.95□□□□□ -0.66
USP4-214ENST00000491791 ANO4Q32M45 955 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 SNX30Q5VWJ9 437 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 ATG16L1Q676U5 607 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 PSRC1Q6PGN9 363 aaPredicted RBP10.95□□□□□ -0.66
USP4-214ENST00000491791 CNTN4Q8IWV2 1026 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 CCDC33Q8N5R6 958 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.95□□□□□ -0.66
USP4-214ENST00000491791 STKLD1Q8NE28 680 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 OR52K1Q8NGK4 314 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 OR6Y1Q8NGX8 325 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 HASPINQ8TF76 798 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 INPP5DQ92835 1189 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 RNF34Q969K3 372 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 TIFAQ96CG3 184 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 LRRC37BQ96QE4 947 aa10.95□□□□□ -0.66
USP4-214ENST00000491791 GAS2L1Q99501 681 aaPredicted RBP10.95□□□□□ -0.66
USP4-214ENST00000491791 KLF6Q99612 283 aaPredicted RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms