RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 KSR2Q6VAB6 950 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.36□□□□□ -1.872e-6■■□□□ 11.9
CPSF3-205ENST00000489629 C16orf82Q7Z2V1 217 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 ARMC9Q7Z3E5 817 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 NR2C2APQ86WQ0 139 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 GATAD2AQ86YP4 633 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 SYTL1Q8IYJ3 562 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 DEPTORQ8TB45 409 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 HMGB4Q8WW32 186 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 APOLD1Q96LR9 279 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 MYD88Q99836 296 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 HDHD5Q9BXW7 423 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 LIN7CQ9NUP9 197 aaKnown RBP3.36□□□□□ -1.87
CPSF3-205ENST00000489629 PCDHGB1Q9Y5G3 927 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 PCDHA10Q9Y5I2 948 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 GOLGA6L3A6NEY3 463 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 SRRM3A6NNA2 597 aaPredicted RBP3.35□□□□□ -1.87
CPSF3-205ENST00000489629 BTBD18B2RXH4 712 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 LDB2O43679 373 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 LIASO43766 372 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 FCGR1AP12314 374 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 UNGP13051 313 aaPredicted RBP3.35□□□□□ -1.87
CPSF3-205ENST00000489629 PPP3CCP48454 512 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 ERVFC1-1P60608 527 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 SEC61A1P61619 476 aaKnown RBP3.35□□□□□ -1.87
CPSF3-205ENST00000489629 RNASELQ05823 741 aaKnown RBP3.35□□□□□ -1.87
CPSF3-205ENST00000489629 TRAF3Q13114 568 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 PTK2BQ14289 1009 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 MTFR2Q6P444 385 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 DPP10Q8N608 796 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 LRRC57Q8N9N7 239 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 ZBTB8BQ8NAP8 495 aaPredicted RBP3.35□□□□□ -1.87
CPSF3-205ENST00000489629 NEXN-AS1Q8NBZ9 246 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 FAM71BQ8TC56 605 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 NR4A3Q92570 626 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 EID2BQ96D98 161 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 TMEM41AQ96HV5 264 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 PLSCR4Q9NRQ2 329 aa3.35□□□□□ -1.87
CPSF3-205ENST00000489629 CYSRT1A8MQ03 144 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 SMTNL1A8MU46 457 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 VWA5AO00534 786 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 TNFRSF6BO95407 300 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 ZBTB11O95625 1053 aaPredicted RBP3.34□□□□□ -1.87
CPSF3-205ENST00000489629 IGKV3-20P01619 116 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 PRSS2P07478 247 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 NBPF7P0C2Y1 421 aaPredicted RBP3.34□□□□□ -1.87
CPSF3-205ENST00000489629 MYZAPP0CAP1 466 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 GYS1P13807 737 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 PRKCHP24723 683 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 AVPR1AP37288 418 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 COMPP49747 757 aaPredicted RBP3.34□□□□□ -1.87
CPSF3-205ENST00000489629 CYP2J2P51589 502 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 NEK3P51956 506 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 SPARCL1Q14515 664 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 IZUMO4Q1ZYL8 232 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 ZNF284Q2VY69 593 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 TBRG1Q3YBR2 411 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 C5orf22Q49AR2 442 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 FAM171A1Q5VUB5 890 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 IL31Q6EBC2 164 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 SLC2A12Q8TD20 617 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 PDE11AQ9HCR9 933 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 GEMIN8Q9NWZ8 242 aaKnown RBP3.34□□□□□ -1.87
CPSF3-205ENST00000489629 IL36RNQ9UBH0 155 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 KCNG2Q9UJ96 466 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 RCE1Q9Y256 329 aa3.34□□□□□ -1.87
CPSF3-205ENST00000489629 MST1RQ04912 1400 aa3.34□□□□□ -1.88
CPSF3-205ENST00000489629 SCN5AQ14524 2016 aa3.34□□□□□ -1.88
CPSF3-205ENST00000489629 A0A0A0MQY5 61 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 NPIPB13A6NJU9 1138 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 NPIPB5A8MRT5 1133 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 NPIPB4C9JG80 1138 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 GRM8O00222 908 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 HSPB6O14558 160 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 DDNO94850 711 aaPredicted RBP3.33□□□□□ -1.88
CPSF3-205ENST00000489629 TMCC1O94876 653 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 ZNF432O94892 652 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 HLA-DQA2P01906 255 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 CYP21A2P08686 494 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 ITGB8P26012 769 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 TYK2P29597 1187 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 PPM1AP35813 382 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 THPOP40225 353 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 TECP42680 631 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 AMTP48728 403 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 OAZ1P54368 228 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 TMPRSS3P57727 454 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 CDK18Q07002 472 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 TRAF2Q12933 501 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 COASYQ13057 564 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 DCTN1Q14203 1278 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 TTC22Q5TAA0 569 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 CCDC181Q5TID7 509 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 HEPHL1Q6MZM0 1159 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 SPSB3Q6PJ21 355 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 SRLQ86TD4 932 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 HORMAD2Q8N7B1 307 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 TMEM163Q8TC26 289 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 HDAC7Q8WUI4 952 aa3.33□□□□□ -1.88
CPSF3-205ENST00000489629 ZNF333Q96JL9 665 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms