RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 NFKB1P19838 968 aa12.46□□□□□ -0.41
PTPRF-212ENST00000477970 FAM189BP81408 668 aa12.46□□□□□ -0.41
PTPRF-212ENST00000477970 PCLAFQ15004 111 aa12.46□□□□□ -0.41
PTPRF-212ENST00000477970 N4BP2L1Q5TBK1 243 aaPredicted RBP12.46□□□□□ -0.41
PTPRF-212ENST00000477970 CNTN4Q8IWV2 1026 aa12.46□□□□□ -0.41
PTPRF-212ENST00000477970 FAM13CQ8NE31 585 aa12.46□□□□□ -0.41
PTPRF-212ENST00000477970 TBC1D31Q96DN5 1066 aa12.46□□□□□ -0.41
PTPRF-212ENST00000477970 CEP41Q9BYV8 373 aa12.46□□□□□ -0.41
PTPRF-212ENST00000477970 ZCWPW1Q9H0M4 648 aa12.46□□□□□ -0.41
PTPRF-212ENST00000477970 KCNU1A8MYU2 1149 aa12.46□□□□□ -0.42
PTPRF-212ENST00000477970 LMNAP02545 664 aaKnown RBP12.46□□□□□ -0.42
PTPRF-212ENST00000477970 CCR1P32246 355 aa12.46□□□□□ -0.42
PTPRF-212ENST00000477970 RABGGTBP53611 331 aa12.46□□□□□ -0.42
PTPRF-212ENST00000477970 TIGD7Q6NT04 549 aaPredicted RBP12.46□□□□□ -0.42
PTPRF-212ENST00000477970 LONP2Q86WA8 852 aa12.46□□□□□ -0.42
PTPRF-212ENST00000477970 ARL8BQ9NVJ2 186 aa12.46□□□□□ -0.42
PTPRF-212ENST00000477970 NOP53Q9NZM5 478 aaKnown RBP12.46□□□□□ -0.42
PTPRF-212ENST00000477970 STK38LQ9Y2H1 464 aa12.46□□□□□ -0.42
PTPRF-212ENST00000477970 FCHO1O14526 889 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 SIN3BO75182 1162 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 ANXA9O76027 345 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 SERPINA6P08185 405 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 COL6A1P12109 1028 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 CCND3P30281 292 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-212ENST00000477970 HARS2P49590 506 aaKnown RBP12.45□□□□□ -0.42
PTPRF-212ENST00000477970 SLC5A3P53794 718 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 TNK2Q07912 1038 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 ACBD5Q5T8D3 534 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-212ENST00000477970 SPATA2LQ8IUW3 424 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-212ENST00000477970 ZNF669Q96BR6 464 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-212ENST00000477970 C8orf48Q96LL4 319 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 MCM8Q9UJA3 840 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 SCML2Q9UQR0 700 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 ANKRD6Q9Y2G4 727 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 NYNRINQ9P2P1 1898 aaKnown RBP12.45□□□□□ -0.42
PTPRF-212ENST00000477970 MATN3O15232 486 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 MYL4P12829 197 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 MLLT1Q03111 559 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-212ENST00000477970 PDPK2PQ6A1A2 396 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 ARHGAP18Q8N392 663 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 SNX15Q9NRS6 342 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 DNAJC28Q9NX36 388 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 IL37Q9NZH6 218 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 COPG2Q9UBF2 871 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 A8MUI8 341 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 ERVK-10P10266 1014 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 EN2P19622 333 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-212ENST00000477970 PDE1BQ01064 536 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 YWHAHQ04917 246 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-212ENST00000477970 ZBTB16Q05516 673 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 BTBD8Q5XKL5 378 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 TRAF7Q6Q0C0 670 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 DCP1BQ8IZD4 617 aaKnown RBP12.45□□□□□ -0.42
PTPRF-212ENST00000477970 RDH11Q8TC12 318 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 PIWIL2Q8TC59 973 aaKnown RBP12.45□□□□□ -0.42
PTPRF-212ENST00000477970 SERPINB11Q96P15 392 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 MIPEPQ99797 713 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 MID2Q9UJV3 735 aa12.45□□□□□ -0.42
PTPRF-212ENST00000477970 TMEM114B3SHH9 223 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 MAFKO60675 156 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 APOA4P06727 396 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 MAGEA11P43364 429 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 MNX1P50219 401 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-212ENST00000477970 PRKAA2P54646 552 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 SCD5Q86SK9 330 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 KCNMB4Q86W47 210 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 ARID3BQ8IVW6 561 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-212ENST00000477970 DCLK2Q8N568 766 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 CNTD1Q8N815 330 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 DNAAF3Q8N9W5 541 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 NETO2Q8NC67 525 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 TMEM209Q96SK2 561 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 CCDC106Q9BWC9 280 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 C1orf21Q9H246 121 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 RNPEPL1Q9HAU8 725 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 HGSO14964 777 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-212ENST00000477970 PAGE1O75459 146 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 TYK2P29597 1187 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 ADRA1AP35348 466 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 HK2P52789 917 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 ITGA7Q13683 1181 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 PCID2Q5JVF3 399 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 STRA8Q7Z7C7 330 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 WDR75Q8IWA0 830 aaKnown RBP12.44□□□□□ -0.42
PTPRF-212ENST00000477970 ATPAF2Q8N5M1 289 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 AGAP3Q96P47 875 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 GPR22Q99680 433 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 CADM1Q9BY67 442 aaKnown RBP12.44□□□□□ -0.42
PTPRF-212ENST00000477970 C20orf27Q9GZN8 174 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 FBXO6Q9NRD1 293 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-212ENST00000477970 OSER1Q9NX31 292 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 SLC17A6Q9P2U8 582 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 PPARGC1AQ9UBK2 798 aaKnown RBP12.44□□□□□ -0.42
PTPRF-212ENST00000477970 SHROOM3Q8TF72 1996 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 FAM92AA1XBS5 289 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 F5H423 210 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-212ENST00000477970 GSC2O15499 205 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 MAGEC1O60732 1142 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 PEX11AO75192 247 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 SLC2A3P11169 496 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms