RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 CDKAL1Q5VV42 579 aa19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 ERICH1Q86X53 443 aa19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 SH2D3CQ8N5H7 860 aa19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 RHBDD1Q8TEB9 315 aa19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 PPP1R9BQ96SB3 815 aa19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 PSMB7Q99436 277 aa19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 TMEM59LQ9UK28 342 aa19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 NOCTQ9UK39 431 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 HS3ST2Q9Y278 367 aa19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 IGLV3-10A0A075B6K4 115 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 A0A1W2PR77 199 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 RTN2O75298 545 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 F9P00740 461 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 CAPNS1P04632 268 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 ATXN1LP0C7T5 689 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 KLK7P49862 253 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 IL9RQ01113 521 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 ACCSLQ4AC99 568 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 AGBL4Q5VU57 503 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 ENOX1Q8TC92 643 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 SLC20A1Q8WUM9 679 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 CPA5Q8WXQ8 436 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 OR8D1Q8WZ84 308 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 CDC6Q99741 560 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 MUC3BQ9H195 1237 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 ZNF212Q9UDV6 495 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 VPS51Q9UID3 782 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 PPM1HQ9ULR3 514 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 ACACAQ13085 2346 aa19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 SMG1Q96Q15 3661 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-206ENST00000473405 A0A1B0GTQ1 180 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 DRGXA6NNA5 263 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 GOLGA8SH3BPF8 625 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 MCF2LO15068 1137 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 ALOX15BO15296 676 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 PLRG1O43660 514 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 SNAP91O60641 907 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 MT-CO1P00395 513 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 SRCP12931 536 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 CD38P28907 300 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 GRK6P43250 576 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 C21orf59P57076 290 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 SUZ12Q15022 739 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 KRT31Q15323 416 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 NAA35Q5VZE5 725 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 LRSAM1Q6UWE0 723 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 RBM43Q6ZSC3 357 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 DSG4Q86SJ6 1040 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 C1orf74Q96LT6 269 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 CFAP57Q96MR6 1250 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 AASDHPPTQ9NRN7 309 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 MPP6Q9NZW5 540 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 ARHGAP20Q9P2F6 1191 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 PAXBP1Q9Y5B6 917 aa19.28■□□□□ 0.68
CCDC88B-206ENST00000473405 TBC1D3DA0A087WVF3 549 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 TBC1D3IA0A087WXS9 549 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 TBC1D3EA0A087X179 549 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 TBC1D3KA0A087X1G2 549 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 A0A0D9SEW6 157 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 TBC1D3FA6NER0 549 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 SRRM3A6NNA2 597 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 TBC1D3LB9A6J9 549 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 E9PAM4 449 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 EPHB6O15197 1021 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 SLC7A4O43246 635 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 DFNA5O60443 496 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 CTSLP07711 333 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 RHOCP08134 193 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 TBC1D3HP0C7X1 549 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 JAM2P57087 298 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 CNTN1Q12860 1018 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 SHBQ15464 509 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 POM121L1PQ3SYA9 428 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 PRAMEF14Q5SWL7 426 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 TBC1D3GQ6DHY5 549 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 TBC1D3CQ6IPX1 549 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 CCNI2Q6ZMN8 369 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 TFAP2DQ7Z6R9 452 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 SETD3Q86TU7 594 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 TBC1D3Q8IZP1 549 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 PIP4K2CQ8TBX8 421 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 GPT2Q8TD30 523 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 SERAC1Q96JX3 654 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 ELF4Q99607 663 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 C2orf49Q9BVC5 232 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 VPS16Q9H269 839 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 KDM4CQ9H3R0 1056 aa19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 TPX2Q9ULW0 747 aaKnown RBP19.27■□□□□ 0.68
CCDC88B-206ENST00000473405 GOLGA4Q13439 2230 aaKnown RBP19.27■□□□□ 0.67
CCDC88B-206ENST00000473405 K7ERQ8 282 aa19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 GFPT2O94808 682 aa19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 CHRNB2P17787 502 aa19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 TAS2R38P59533 333 aa19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 RAB6CQ53S08 254 aa19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 FAM46CQ5VWP2 391 aa19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 ARCQ7LC44 396 aa19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 TRIM69Q86WT6 500 aa19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 EMC1Q8N766 993 aa19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 DCAF4L2Q8NA75 395 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms