RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 SUN2Q9UH99 717 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 MBD1Q9UIS9 605 aaPredicted RBP11.94□□□□□ -0.5
CUX1-207ENST00000465461 SLC25A13Q9UJS0 675 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 INTUQ9ULD6 942 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 CYP8B1Q9UNU6 501 aa11.94□□□□□ -0.5
CUX1-207ENST00000465461 WASH4PA8MWX3 477 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 RAMP2O60895 175 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 MTA2O94776 668 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 CD160O95971 181 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 SRCP12931 536 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 CDH6P55285 790 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 RPS14P62263 151 aaKnown RBP11.93□□□□□ -0.5
CUX1-207ENST00000465461 SULT2A1Q06520 285 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 KRT81Q14533 505 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 POLD3Q15054 466 aaPredicted RBP11.93□□□□□ -0.5
CUX1-207ENST00000465461 DPYSL2Q16555 572 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 HADHQ16836 314 aaKnown RBP11.93□□□□□ -0.5
CUX1-207ENST00000465461 HNRNPA1L2Q32P51 320 aaKnown RBP11.93□□□□□ -0.5
CUX1-207ENST00000465461 MAP7D1Q3KQU3 841 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 USP39Q53GS9 565 aaKnown RBP11.93□□□□□ -0.5
CUX1-207ENST00000465461 Q6ZVU0 165 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 POLNQ7Z5Q5 900 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 SH2D3CQ8N5H7 860 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 NPWQ8N729 165 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 DCAF4L2Q8NA75 395 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 SUMF1Q8NBK3 374 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 OR2T3Q8NH03 318 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 FRS2Q8WU20 508 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 GAB3Q8WWW8 586 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 NKD2Q969F2 451 aaPredicted RBP11.93□□□□□ -0.5
CUX1-207ENST00000465461 HMCESQ96FZ2 354 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 PPP1R9BQ96SB3 815 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 NCAPGQ9BPX3 1015 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 C2orf49Q9BVC5 232 aaPredicted RBP11.93□□□□□ -0.5
CUX1-207ENST00000465461 ACE2Q9BYF1 805 aaPredicted RBP11.93□□□□□ -0.5
CUX1-207ENST00000465461 SLC39A8Q9C0K1 460 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 LACRTQ9GZZ8 138 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 TNKS2Q9H2K2 1166 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 TRIM10Q9UDY6 481 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 FCF1Q9Y324 198 aaKnown RBP11.93□□□□□ -0.5
CUX1-207ENST00000465461 CKAP5Q14008 2032 aa11.93□□□□□ -0.5
CUX1-207ENST00000465461 CCDC163A0A0D9SF12 145 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 GOLGA6L6A8MZA4 724 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 RASA4BC9J798 803 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 H3BRJ5 948 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 RNF103O00237 685 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 FGF10O15520 208 aaPredicted RBP11.92□□□□□ -0.5
CUX1-207ENST00000465461 ZBTB24O43167 697 aaPredicted RBP11.92□□□□□ -0.5
CUX1-207ENST00000465461 RASA4O43374 803 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 ATP9BO43861 1147 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 BUB1BO60566 1050 aaPredicted RBP11.92□□□□□ -0.5
CUX1-207ENST00000465461 COMTP21964 271 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 IL4RP24394 825 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 PLA2G5P39877 138 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 NNMTP40261 264 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 P2RY2P41231 377 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 ARHGAP25P42331 645 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 ARSEP51690 589 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 METAP1P53582 386 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 DPYSQ14117 519 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 ZFYVE27Q5T4F4 411 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 ZNF783Q6ZMS7 281 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 ARHGAP36Q6ZRI8 547 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 FAM124AQ86V42 546 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 ALYREFQ86V81 257 aaKnown RBP11.92□□□□□ -0.5
CUX1-207ENST00000465461 PSTKQ8IV42 348 aaKnown RBP11.92□□□□□ -0.5
CUX1-207ENST00000465461 MMAAQ8IVH4 418 aaKnown RBP11.92□□□□□ -0.5
CUX1-207ENST00000465461 DCLK2Q8N568 766 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 KCTD6Q8NC69 237 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 TEKT4Q8WW24 435 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 RAPGEF5Q92565 580 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 PRCCQ92733 491 aaPredicted RBP11.92□□□□□ -0.5
CUX1-207ENST00000465461 SIPA1Q96FS4 1042 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 CSPG4P5Q96PW8 444 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 FAM129BQ96TA1 746 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 MAGEH1Q9H213 219 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 EPC1Q9H2F5 836 aa11.92□□□□□ -0.5
CUX1-207ENST00000465461 SMG5Q9UPR3 1016 aaKnown RBP11.92□□□□□ -0.5
CUX1-207ENST00000465461 CACNA1HO95180 2353 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 IGHV1OR15-9A0A0B4J2B8 117 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 EDDM13A0A1B0GTR0 161 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 PRR23AA6NEV1 266 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 PROB1E7EW31 1015 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 J3KR12 359 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 DFFAO00273 331 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 PLK4O00444 970 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 KDELR3O43731 214 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 LMNAP02545 664 aaKnown RBP11.91□□□□□ -0.5
CUX1-207ENST00000465461 MAN1A1P33908 653 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 CNR2P34972 360 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 ARL4AP40617 200 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 PSMD8P48556 350 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 PAPOLAP51003 745 aaKnown RBP11.91□□□□□ -0.5
CUX1-207ENST00000465461 DNA2P51530 1060 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 NAP1L1P55209 391 aaKnown RBP11.91□□□□□ -0.5
CUX1-207ENST00000465461 GSDMDP57764 484 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 DPYSL3Q14195 570 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 TCEAL1Q15170 157 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 E2F5Q15329 346 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms