RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 TEX33O43247 280 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 RNASEH2AO75792 299 aaKnown RBP12.35□□□□□ -0.43
USP40-210ENST00000454354 FSBPO95073 299 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 CER1O95813 267 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 SRCP12931 536 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 FERP16591 822 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 GOT1P17174 413 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 DRD3P35462 400 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 GALCP54803 685 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 ADPRHP54922 357 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 KRT83P78385 493 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 ATP11AP98196 1134 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 C1QBPQ07021 282 aaKnown RBP12.35□□□□□ -0.43
USP40-210ENST00000454354 HNRNPDQ14103 355 aaKnown RBP12.35□□□□□ -0.43
USP40-210ENST00000454354 DLG2Q15700 870 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 C15orf59Q2T9L4 293 aaPredicted RBP12.35□□□□□ -0.43
USP40-210ENST00000454354 RAB6CQ53S08 254 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 KIAA0895LQ68EN5 471 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 CAVIN1Q6NZI2 390 aaKnown RBP12.35□□□□□ -0.43
USP40-210ENST00000454354 NCEH1Q6PIU2 408 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 DSG4Q86SJ6 1040 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 OR2T34Q8NGX1 318 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 OR8D1Q8WZ84 308 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 CNTNAP3BQ96NU0 1288 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 AGPAT1Q99943 283 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 OMDQ99983 421 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 SYT11Q9BT88 431 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 CNTNAP3Q9BZ76 1288 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 ZYG11BQ9C0D3 744 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 RAB6CQ9H0N0 254 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 NEUROG2Q9H2A3 272 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 RETREG1Q9H6L5 497 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 TM9SF3Q9HD45 589 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 TPX2Q9ULW0 747 aaKnown RBP12.35□□□□□ -0.43
USP40-210ENST00000454354 WASF3Q9UPY6 502 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 NEU3Q9UQ49 428 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 TRPM6Q9BX84 2022 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 SPEGQ15772 3267 aa12.35□□□□□ -0.43
USP40-210ENST00000454354 CXorf51AA0A1B0GTR3 108 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 A0A1B0GVT2 93 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 A0A1W2PPC4 97 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 ILVBLA1L0T0 632 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 MCF2LO15068 1137 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 SLC7A4O43246 635 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 SNAP91O60641 907 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 GJB6O95452 261 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 IL1BP01584 269 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 CCDC172P0C7W6 258 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 KRT3P12035 628 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 OR1E1P30953 314 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 RFC1P35251 1148 aaPredicted RBP12.34□□□□□ -0.43
USP40-210ENST00000454354 ADRA1BP35368 520 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 CCR5P51681 352 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 CLCN6P51797 869 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 SCAPQ12770 1279 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 TEAD4Q15561 434 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 CDO1Q16878 200 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 ARL13BQ3SXY8 428 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 PPP1R15BQ5SWA1 713 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 LRSAM1Q6UWE0 723 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 Q6ZVU0 165 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 IRF2BP2Q7Z5L9 587 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 TFAP2DQ7Z6R9 452 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 GANCQ8TET4 914 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 FAM172AQ8WUF8 416 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 BAP1Q92560 729 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 NTAN1Q96AB6 310 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 OSBPL2Q9H1P3 480 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 PPM1HQ9ULR3 514 aa12.34□□□□□ -0.43
USP40-210ENST00000454354 ANKRD36A6QL64 1941 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 A0A0D9SEW6 157 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 A0A1B0GTH6 734 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 A0A1W2PQC6 194 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 SIGLEC16A6NMB1 481 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 C1QTNF3-AMACRE9PGA6 284 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 LATO43561 262 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 PLRG1O43660 514 aaKnown RBP12.33□□□□□ -0.44
USP40-210ENST00000454354 SRGAP2O75044 1071 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 MT-CO1P00395 513 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 GPD1P21695 349 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 CSNK1EP49674 416 aaKnown RBP12.33□□□□□ -0.44
USP40-210ENST00000454354 ZNF165P49910 485 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 METAP1P53582 386 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 HDAC4P56524 1084 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 RACK1P63244 317 aaKnown RBP12.33□□□□□ -0.44
USP40-210ENST00000454354 IQCB1Q15051 598 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 HLA-BQ31612 363 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 ACCSLQ4AC99 568 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 FAM46CQ5VWP2 391 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 PPP1R2P3Q6NXS1 205 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 WDR59Q6PJI9 974 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 PHLDB2Q86SQ0 1253 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 NLRP14Q86W24 1093 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 NAXDQ8IW45 347 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 PIP4K2CQ8TBX8 421 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 SELENOOQ9BVL4 669 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 KDM4CQ9H3R0 1056 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 GAREM1Q9H706 876 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 EBF2Q9HAK2 575 aa12.33□□□□□ -0.44
USP40-210ENST00000454354 OR12D3Q9UGF7 316 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms