RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 MPOP05164 745 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 CTSHP09668 335 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 ZNF280AP59817 542 aaPredicted RBP12.09□□□□□ -0.47
MSH6-204ENST00000445503 ESRRGP62508 458 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 MAP3K10Q02779 954 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 PLOD1Q02809 727 aaPredicted RBP12.09□□□□□ -0.47
MSH6-204ENST00000445503 PRKAA1Q13131 559 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 GRM3Q14832 879 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 DCAF4L1Q3SXM0 396 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 OR52E8Q6IFG1 317 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 SLC27A1Q6PCB7 646 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 AMIGO2Q86SJ2 522 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 DNAJB3Q8WWF6 145 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 C12orf42Q96LP6 360 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 SLC4A5Q9BY07 1137 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 XPR1Q9UBH6 696 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 A0A1B0GVG6 124 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 M0QZ92 97 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 PSMC3P17980 439 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 PAMP19021 973 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 EEF1B2P24534 225 aaKnown RBP12.09□□□□□ -0.47
MSH6-204ENST00000445503 KPNA2P52292 529 aaKnown RBP12.09□□□□□ -0.47
MSH6-204ENST00000445503 DPYSL2Q16555 572 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 ANO4Q32M45 955 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 LSM12Q3MHD2 195 aaKnown RBP12.09□□□□□ -0.47
MSH6-204ENST00000445503 SV2CQ496J9 727 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 SYPL2Q5VXT5 272 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 SLC26A9Q7LBE3 791 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 OTOP3Q7RTS5 596 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 GABPB2Q8TAK5 448 aaPredicted RBP12.09□□□□□ -0.47
MSH6-204ENST00000445503 HASPINQ8TF76 798 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 WNT8BQ93098 351 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 PABPC5Q96DU9 382 aaKnown RBP12.09□□□□□ -0.47
MSH6-204ENST00000445503 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.09□□□□□ -0.47
MSH6-204ENST00000445503 COL2A1P02458 1487 aaPredicted RBP12.09□□□□□ -0.47
MSH6-204ENST00000445503 NOL3O60936 208 aaKnown RBP12.08□□□□□ -0.47
MSH6-204ENST00000445503 USP2O75604 605 aaPredicted RBP12.08□□□□□ -0.47
MSH6-204ENST00000445503 MYL4P12829 197 aa12.08□□□□□ -0.47
MSH6-204ENST00000445503 TFEBP19484 476 aa12.08□□□□□ -0.47
MSH6-204ENST00000445503 TEX44Q53QW1 395 aa12.08□□□□□ -0.47
MSH6-204ENST00000445503 ZNF470Q6ECI4 717 aa12.08□□□□□ -0.47
MSH6-204ENST00000445503 FAM43BQ6ZT52 329 aaPredicted RBP12.08□□□□□ -0.47
MSH6-204ENST00000445503 LCA5Q86VQ0 697 aa12.08□□□□□ -0.47
MSH6-204ENST00000445503 NUP93Q8N1F7 819 aa12.08□□□□□ -0.47
MSH6-204ENST00000445503 CATSPER1Q8NEC5 780 aa12.08□□□□□ -0.47
MSH6-204ENST00000445503 SLC35F5Q8WV83 523 aa12.08□□□□□ -0.47
MSH6-204ENST00000445503 SPATA16Q9BXB7 569 aa12.08□□□□□ -0.47
MSH6-204ENST00000445503 PTPRHQ9HD43 1115 aa12.08□□□□□ -0.47
MSH6-204ENST00000445503 TXNRD2Q9NNW7 524 aa12.08□□□□□ -0.47
MSH6-204ENST00000445503 DMAP1Q9NPF5 467 aaPredicted RBP12.08□□□□□ -0.47
MSH6-204ENST00000445503 NFKBIEO00221 500 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 ATP5BP06576 529 aaKnown RBP12.08□□□□□ -0.48
MSH6-204ENST00000445503 FAM58BPP0C7Q3 252 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 HSPA8P11142 646 aaKnown RBP12.08□□□□□ -0.48
MSH6-204ENST00000445503 XRCC1P18887 633 aaPredicted RBP12.08□□□□□ -0.48
MSH6-204ENST00000445503 NOS2P35228 1153 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 TMEM259Q4ZIN3 620 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 TMEM110Q86TL2 294 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 ZNF513Q8N8E2 541 aaPredicted RBP12.08□□□□□ -0.48
MSH6-204ENST00000445503 DDX43Q9NXZ2 648 aaKnown RBP12.08□□□□□ -0.48
MSH6-204ENST00000445503 THEGQ9P2T0 379 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 IGKV6D-21A0A0A0MT36 114 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 ARHGEF37A1IGU5 675 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 SAC3D1A6NKF1 404 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 NMBRP28336 390 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 RAB27AP51159 221 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 CCNIQ14094 377 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 UGP2Q16851 508 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 FAM83EQ2M2I3 478 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 LRRC43Q8N309 656 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 SPATA22Q8NHS9 363 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 PDCD6IPQ8WUM4 868 aaKnown RBP12.08□□□□□ -0.48
MSH6-204ENST00000445503 RBBP8Q99708 897 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 TKTL2Q9H0I9 626 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 DNAJC28Q9NX36 388 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 PPME1Q9Y570 386 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 SUPT3HO75486 399 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 THOP1P52888 689 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 RALGDSQ12967 914 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 SLC25A52Q3SY17 297 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 C9orf57Q5W0N0 161 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 GK5Q6ZS86 529 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 B3GALNT2Q8NCR0 500 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 ZMAT2Q96NC0 199 aaKnown RBP12.08□□□□□ -0.48
MSH6-204ENST00000445503 PCDHB12Q9Y5F1 795 aa12.08□□□□□ -0.48
MSH6-204ENST00000445503 TMEM233B4DJY2 109 aa12.07□□□□□ -0.48
MSH6-204ENST00000445503 FAM189A1O60320 539 aa12.07□□□□□ -0.48
MSH6-204ENST00000445503 SNNO75324 88 aaPredicted RBP12.07□□□□□ -0.48
MSH6-204ENST00000445503 CDH17Q12864 832 aa12.07□□□□□ -0.48
MSH6-204ENST00000445503 CES4AQ5XG92 561 aa12.07□□□□□ -0.48
MSH6-204ENST00000445503 SETD3Q86TU7 594 aaPredicted RBP12.07□□□□□ -0.48
MSH6-204ENST00000445503 PDZD8Q8NEN9 1154 aa12.07□□□□□ -0.48
MSH6-204ENST00000445503 ACTRT2Q8TDY3 377 aa12.07□□□□□ -0.48
MSH6-204ENST00000445503 GATA6Q92908 595 aa12.07□□□□□ -0.48
MSH6-204ENST00000445503 FCRL3Q96P31 734 aaPredicted RBP12.07□□□□□ -0.48
MSH6-204ENST00000445503 TMEM79Q9BSE2 394 aa12.07□□□□□ -0.48
MSH6-204ENST00000445503 CXCL16Q9H2A7 254 aa12.07□□□□□ -0.48
MSH6-204ENST00000445503 POMKQ9H5K3 350 aa12.07□□□□□ -0.48
MSH6-204ENST00000445503 CDHR5Q9HBB8 845 aa12.07□□□□□ -0.48
MSH6-204ENST00000445503 NCKIPSDQ9NZQ3 722 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms