RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 RPS6KA1Q15418 735 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 HADHQ16836 314 aaKnown RBP12.53□□□□□ -0.4
PTPRF-208ENST00000437607 BSPRYQ5W0U4 402 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 SDE2Q6IQ49 451 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 TRNP1Q6NT89 227 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 KLHDC10Q6PID8 442 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 BEND5Q7L4P6 421 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 RABEPKQ7Z6M1 372 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 SLFN11Q7Z7L1 901 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 TADA2BQ86TJ2 420 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 NT5DC3Q86UY8 548 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 FAM172AQ8WUF8 416 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 UBE2Q2Q8WVN8 375 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 BHMTQ93088 406 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 CDK5RAP1Q96SZ6 601 aaKnown RBP12.53□□□□□ -0.4
PTPRF-208ENST00000437607 ABCC13Q9NSE7 274 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 OLA1Q9NTK5 396 aaKnown RBP12.53□□□□□ -0.4
PTPRF-208ENST00000437607 LSM7Q9UK45 103 aaKnown RBP12.53□□□□□ -0.4
PTPRF-208ENST00000437607 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.53□□□□□ -0.4
PTPRF-208ENST00000437607 HYOU1Q9Y4L1 999 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 ALG6Q9Y672 507 aa12.53□□□□□ -0.4
PTPRF-208ENST00000437607 GCN1Q92616 2671 aaKnown RBP12.53□□□□□ -0.4
PTPRF-208ENST00000437607 SHROOM3Q8TF72 1996 aa12.52□□□□□ -0.4
PTPRF-208ENST00000437607 CCDC66A2RUB6 948 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 H0Y626 953 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 ENC1O14682 589 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 TRIM16O95361 564 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 PENKP01210 267 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-208ENST00000437607 ATP1A1P05023 1023 aaKnown RBP12.52□□□□□ -0.41
PTPRF-208ENST00000437607 RDXP35241 583 aaKnown RBP12.52□□□□□ -0.41
PTPRF-208ENST00000437607 RING1Q06587 406 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 ENPP2Q13822 863 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 GEN1Q17RS7 908 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 C15orf59Q2T9L4 293 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-208ENST00000437607 PLEKHG6Q3KR16 790 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 SLC25A52Q3SY17 297 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 FUT11Q495W5 492 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 ODF2Q5BJF6 829 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 ZFYVE27Q5T4F4 411 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 MEI1Q5TIA1 1274 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 FYB2Q5VWT5 728 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 RHOT1Q8IXI2 618 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 RGL4Q8IZJ4 473 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 EDEM1Q92611 657 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 SERPINB11Q96P15 392 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 TBCBQ99426 244 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 MKRN2Q9H000 416 aaKnown RBP12.52□□□□□ -0.41
PTPRF-208ENST00000437607 CLIC5Q9NZA1 410 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 PACSIN2Q9UNF0 486 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-208ENST00000437607 STON1Q9Y6Q2 735 aa12.52□□□□□ -0.41
PTPRF-208ENST00000437607 SYNJ2BP-COX16A0A087WUM0 186 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 PRPSAP2O60256 369 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 NDUFS2O75306 463 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 LRCH4O75427 683 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 KRT1P04264 644 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 SYPP08247 313 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 TCP1P17987 556 aaKnown RBP12.51□□□□□ -0.41
PTPRF-208ENST00000437607 CTNNA2P26232 953 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 CTNNA1P35221 906 aaKnown RBP12.51□□□□□ -0.41
PTPRF-208ENST00000437607 PCK1P35558 622 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 IL12RB1P42701 662 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 DEUP1Q05D60 604 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 GRIK2Q13002 908 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 TRIP6Q15654 476 aaKnown RBP12.51□□□□□ -0.41
PTPRF-208ENST00000437607 ZNF423Q2M1K9 1284 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 CCDC14Q49A88 953 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 C10orf120Q5SQS8 335 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 SEL1L2Q5TEA6 688 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 MSANTD2Q6P1R3 559 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 KIAA1324Q6UXG2 1013 aaKnown RBP12.51□□□□□ -0.41
PTPRF-208ENST00000437607 SND1Q7KZF4 910 aaKnown RBP eCLIP12.51□□□□□ -0.41
PTPRF-208ENST00000437607 STRADAQ7RTN6 431 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 METTL3Q86U44 580 aaKnown RBP12.51□□□□□ -0.41
PTPRF-208ENST00000437607 TAC4Q86UU9 113 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 ZNF276Q8N554 614 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 DQX1Q8TE96 717 aaKnown RBP12.51□□□□□ -0.41
PTPRF-208ENST00000437607 DNASE2BQ8WZ79 361 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 TOE1Q96GM8 510 aaKnown RBP12.51□□□□□ -0.41
PTPRF-208ENST00000437607 NPY6RQ99463 290 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 DDIT4Q9NX09 232 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 WSB2Q9NYS7 404 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-208ENST00000437607 COX16Q9P0S2 106 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 USP36Q9P275 1121 aaKnown RBP12.51□□□□□ -0.41
PTPRF-208ENST00000437607 THAP10Q9P2Z0 257 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-208ENST00000437607 DNMT3LQ9UJW3 386 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 CLEC4EQ9ULY5 219 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 NAALADL1Q9UQQ1 740 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 SLC27A6Q9Y2P4 619 aa12.51□□□□□ -0.41
PTPRF-208ENST00000437607 M0QYT0 321 aa12.5□□□□□ -0.41
PTPRF-208ENST00000437607 IRAK2O43187 625 aa12.5□□□□□ -0.41
PTPRF-208ENST00000437607 CBFA2T3O75081 653 aa12.5□□□□□ -0.41
PTPRF-208ENST00000437607 KRT7P08729 469 aa12.5□□□□□ -0.41
PTPRF-208ENST00000437607 CD6P30203 668 aa12.5□□□□□ -0.41
PTPRF-208ENST00000437607 BNC1Q01954 994 aa12.5□□□□□ -0.41
PTPRF-208ENST00000437607 NME3Q13232 169 aa12.5□□□□□ -0.41
PTPRF-208ENST00000437607 SLC14A1Q13336 389 aa12.5□□□□□ -0.41
PTPRF-208ENST00000437607 LRRC38Q5VT99 294 aa12.5□□□□□ -0.41
PTPRF-208ENST00000437607 SYPL2Q5VXT5 272 aa12.5□□□□□ -0.41
PTPRF-208ENST00000437607 SCYL2Q6P3W7 929 aa12.5□□□□□ -0.41
PTPRF-208ENST00000437607 POLNQ7Z5Q5 900 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms