RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 FUT11Q495W5 492 aa8.82□□□□□ -1
USP40-203ENST00000427112 ACBD5Q5T8D3 534 aaPredicted RBP8.82□□□□□ -1
USP40-203ENST00000427112 TSHZ1Q6ZSZ6 1077 aa8.82□□□□□ -1
USP40-203ENST00000427112 GPRIN1Q7Z2K8 1008 aa8.82□□□□□ -1
USP40-203ENST00000427112 NPWQ8N729 165 aa8.82□□□□□ -1
USP40-203ENST00000427112 NIPA2Q8N8Q9 360 aa8.82□□□□□ -1
USP40-203ENST00000427112 ELMO2Q96JJ3 720 aa8.82□□□□□ -1
USP40-203ENST00000427112 MYO7AQ13402 2215 aa8.82□□□□□ -1
USP40-203ENST00000427112 YJEFN3A6XGL0 299 aa8.82□□□□□ -1
USP40-203ENST00000427112 E7ENQ6 273 aa8.82□□□□□ -1
USP40-203ENST00000427112 H3BSA7 217 aa8.82□□□□□ -1
USP40-203ENST00000427112 PDLIM1O00151 329 aa8.82□□□□□ -1
USP40-203ENST00000427112 ONECUT3O60422 494 aaPredicted RBP8.82□□□□□ -1
USP40-203ENST00000427112 B4GALT4O60513 344 aa8.82□□□□□ -1
USP40-203ENST00000427112 USP2O75604 605 aaPredicted RBP8.82□□□□□ -1
USP40-203ENST00000427112 GJB3O75712 270 aa8.82□□□□□ -1
USP40-203ENST00000427112 GSRP00390 522 aa8.82□□□□□ -1
USP40-203ENST00000427112 PIK3R1P27986 724 aa8.82□□□□□ -1
USP40-203ENST00000427112 TKTL1P51854 596 aa8.82□□□□□ -1
USP40-203ENST00000427112 CDKL1Q00532 357 aa8.82□□□□□ -1
USP40-203ENST00000427112 ZBTB17Q13105 803 aa8.82□□□□□ -1
USP40-203ENST00000427112 DNAL1Q4LDG9 190 aa8.82□□□□□ -1
USP40-203ENST00000427112 ZNF789Q5FWF6 425 aa8.82□□□□□ -1
USP40-203ENST00000427112 TWF2Q6IBS0 349 aaKnown RBP8.82□□□□□ -1
USP40-203ENST00000427112 NET1Q7Z628 596 aaPredicted RBP8.82□□□□□ -1
USP40-203ENST00000427112 ARNTL2Q8WYA1 636 aa8.82□□□□□ -1
USP40-203ENST00000427112 EME1Q96AY2 570 aa8.82□□□□□ -1
USP40-203ENST00000427112 DCUN1D1Q96GG9 259 aa8.82□□□□□ -1
USP40-203ENST00000427112 PKP2Q99959 881 aa8.82□□□□□ -1
USP40-203ENST00000427112 PAAF1Q9BRP4 392 aa8.82□□□□□ -1
USP40-203ENST00000427112 MRPL1Q9BYD6 325 aaKnown RBP8.82□□□□□ -1
USP40-203ENST00000427112 ULBP1Q9BZM6 244 aa8.82□□□□□ -1
USP40-203ENST00000427112 TLE6Q9H808 572 aa8.82□□□□□ -1
USP40-203ENST00000427112 PREBQ9HCU5 417 aa8.82□□□□□ -1
USP40-203ENST00000427112 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.82□□□□□ -1
USP40-203ENST00000427112 MPP6Q9NZW5 540 aa8.82□□□□□ -1
USP40-203ENST00000427112 CRYL1Q9Y2S2 319 aa8.82□□□□□ -1
USP40-203ENST00000427112 RBBP6Q7Z6E9 1792 aaKnown RBP8.82□□□□□ -1
USP40-203ENST00000427112 POLR2AP24928 1970 aaKnown RBP8.82□□□□□ -1
USP40-203ENST00000427112 HTTP42858 3142 aa8.82□□□□□ -1
USP40-203ENST00000427112 BRWD3Q6RI45 1802 aa8.81□□□□□ -1
USP40-203ENST00000427112 F8W810 466 aa8.81□□□□□ -1
USP40-203ENST00000427112 H3BRB1 525 aa8.81□□□□□ -1
USP40-203ENST00000427112 PPP6CO00743 305 aa8.81□□□□□ -1
USP40-203ENST00000427112 POLBP06746 335 aa8.81□□□□□ -1
USP40-203ENST00000427112 YAP1P46937 504 aaKnown RBP8.81□□□□□ -1
USP40-203ENST00000427112 TPI1P60174 286 aa8.81□□□□□ -1
USP40-203ENST00000427112 CAPRIN1Q14444 709 aaKnown RBP8.81□□□□□ -1
USP40-203ENST00000427112 LRRC8EQ6NSJ5 796 aa8.81□□□□□ -1
USP40-203ENST00000427112 KCNMB4Q86W47 210 aa8.81□□□□□ -1
USP40-203ENST00000427112 DSELQ8IZU8 1212 aa8.81□□□□□ -1
USP40-203ENST00000427112 OR6P1Q8NGX9 317 aa8.81□□□□□ -1
USP40-203ENST00000427112 URGCPQ8TCY9 931 aa8.81□□□□□ -1
USP40-203ENST00000427112 SLC4A5Q9BY07 1137 aa8.81□□□□□ -1
USP40-203ENST00000427112 FZD8Q9H461 694 aa8.81□□□□□ -1
USP40-203ENST00000427112 TUT1Q9H6E5 874 aaKnown RBP8.81□□□□□ -1
USP40-203ENST00000427112 NMRAL1Q9HBL8 299 aa8.81□□□□□ -1
USP40-203ENST00000427112 MRGBPQ9NV56 204 aa8.81□□□□□ -1
USP40-203ENST00000427112 XPR1Q9UBH6 696 aa8.81□□□□□ -1
USP40-203ENST00000427112 FAM159BA6NKW6 160 aa8.81□□□□□ -1
USP40-203ENST00000427112 ZNF839A8K0R7 811 aa8.81□□□□□ -1
USP40-203ENST00000427112 I6L893 689 aaPredicted RBP8.81□□□□□ -1
USP40-203ENST00000427112 YWHAQP27348 245 aa8.81□□□□□ -1
USP40-203ENST00000427112 DPP6P42658 865 aa8.81□□□□□ -1
USP40-203ENST00000427112 INHBCP55103 352 aa8.81□□□□□ -1
USP40-203ENST00000427112 ROR2Q01974 943 aaKnown RBP8.81□□□□□ -1
USP40-203ENST00000427112 MPP3Q13368 585 aa8.81□□□□□ -1
USP40-203ENST00000427112 PDAP1Q13442 181 aaKnown RBP8.81□□□□□ -1
USP40-203ENST00000427112 R3HDM1Q15032 1099 aaKnown RBP8.81□□□□□ -1
USP40-203ENST00000427112 ESRP1Q6NXG1 681 aaKnown RBP8.81□□□□□ -1
USP40-203ENST00000427112 ARMCX2Q7L311 632 aa8.81□□□□□ -1
USP40-203ENST00000427112 TMC7Q7Z402 723 aa8.81□□□□□ -1
USP40-203ENST00000427112 DPP9Q86TI2 863 aa8.81□□□□□ -1
USP40-203ENST00000427112 GALNT15Q8N3T1 639 aa8.81□□□□□ -1
USP40-203ENST00000427112 HIC2Q96JB3 615 aa8.81□□□□□ -1
USP40-203ENST00000427112 C7orf26Q96N11 449 aa8.81□□□□□ -1
USP40-203ENST00000427112 GORASP1Q9BQQ3 440 aa8.81□□□□□ -1
USP40-203ENST00000427112 SPATA16Q9BXB7 569 aa8.81□□□□□ -1
USP40-203ENST00000427112 BCO2Q9BYV7 579 aa8.81□□□□□ -1
USP40-203ENST00000427112 LHX5Q9H2C1 402 aa8.81□□□□□ -1
USP40-203ENST00000427112 TRPC7Q9HCX4 862 aa8.81□□□□□ -1
USP40-203ENST00000427112 BFARQ9NZS9 450 aa8.81□□□□□ -1
USP40-203ENST00000427112 AP4B1Q9Y6B7 739 aa8.81□□□□□ -1
USP40-203ENST00000427112 A0A0A0MRY4 1105 aa8.81□□□□□ -1
USP40-203ENST00000427112 AHCYL1O43865 530 aa8.81□□□□□ -1
USP40-203ENST00000427112 TSPAN1O60635 241 aa8.81□□□□□ -1
USP40-203ENST00000427112 GLRA3O75311 464 aa8.81□□□□□ -1
USP40-203ENST00000427112 TIPRLO75663 272 aa8.81□□□□□ -1
USP40-203ENST00000427112 PARNO95453 639 aaKnown RBP8.81□□□□□ -1
USP40-203ENST00000427112 FESP07332 822 aa8.81□□□□□ -1
USP40-203ENST00000427112 MX2P20592 715 aa8.81□□□□□ -1
USP40-203ENST00000427112 PCSK6P29122 969 aa8.81□□□□□ -1
USP40-203ENST00000427112 ARPP19P56211 112 aa8.81□□□□□ -1
USP40-203ENST00000427112 CEACAM7Q14002 265 aa8.81□□□□□ -1
USP40-203ENST00000427112 KRT72Q14CN4 511 aa8.81□□□□□ -1
USP40-203ENST00000427112 NADK2Q4G0N4 442 aa8.81□□□□□ -1
USP40-203ENST00000427112 AGKQ53H12 422 aa8.81□□□□□ -1
USP40-203ENST00000427112 LCLAT1Q6UWP7 414 aa8.81□□□□□ -1
USP40-203ENST00000427112 LBX2Q6XYB7 198 aa8.81□□□□□ -1
USP40-203ENST00000427112 MARK2Q7KZI7 788 aaKnown RBP8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms