RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 GOLGA6BA6NDN3 693 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 BHMG1C9JSJ3 638 aaPredicted RBP17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 MATN3O15232 486 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 MAFKO60675 156 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 GOLGA6DP0CG33 693 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 CCNB1P14635 433 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 PTPN3P26045 913 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 FDFT1P37268 417 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 DLX2Q07687 328 aaPredicted RBP17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 IL10RBQ08334 325 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 SERINC3Q13530 473 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 MORF4L2Q15014 288 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 SKIV2LQ15477 1246 aaKnown RBP17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 TRADDQ15628 312 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 EMBQ6PCB8 327 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 FBXO38Q6PIJ6 1188 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 ARHGAP36Q6ZRI8 547 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 CEP128Q6ZU80 1094 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 PID1Q7Z2X4 250 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 PPIL6Q8IXY8 311 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 YAF2Q8IY57 180 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 USP33Q8TEY7 942 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 CDX2Q99626 313 aaPredicted RBP17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 BBS2Q9BXC9 721 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 CEP41Q9BYV8 373 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 S1PR5Q9H228 398 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 ZFP14Q9HCL3 533 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 SPHK2Q9NRA0 654 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 GOLGA6AQ9NYA3 693 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 RSPH14Q9UHP6 348 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 CD207Q9UJ71 328 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 TBC1D30Q9Y2I9 924 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 MYO18AQ92614 2054 aaKnown RBP17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 HEPACAM2A8MVW5 462 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 NEDD8-MDP1E9PL57 170 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 SMAPO00193 183 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 JCHAINP01591 159 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 H2AFXP16104 143 aaPredicted RBP17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 ACVRL1P37023 503 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 VIPR2P41587 438 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 RENBPP51606 427 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 NRLP54845 237 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 IFI35P80217 286 aaPredicted RBP17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 PRPSAP1Q14558 356 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 DENND4AQ7Z401 1863 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 ZNF567Q8N184 647 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 OR7D4Q8NG98 312 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 OSCP1Q8WVF1 389 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 ANKRD7Q92527 254 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 ARHGEF2Q92974 986 aaKnown RBP17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 IRF7Q92985 503 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 ART4Q93070 314 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 AGAP3Q96P47 875 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 TSPYL1Q9H0U9 437 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 PLK2Q9NYY3 685 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 GRHL1Q9NZI5 618 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 VPS28Q9UK41 221 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 SHOC2Q9UQ13 582 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 CHD5Q8TDI0 1954 aa17.49■□□□□ 0.39
CCDC28B-202ENST00000421922 GFRA2O00451 464 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 NFATC1O95644 943 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 ADH1CP00326 375 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 MYBL2P10244 700 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 HOXD9P28356 352 aaPredicted RBP17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 WASHC5Q12768 1159 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 ZNF235Q14590 738 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 TEX44Q53QW1 395 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 TMCO4Q5TGY1 634 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 MARC1Q5VT66 337 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 CXorf57Q6NSI4 855 aaKnown RBP17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 PPP1R21Q6ZMI0 780 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 HOOK3Q86VS8 718 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 RIN3Q8TB24 985 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 FBXO25Q8TCJ0 367 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 HNRNPLLQ8WVV9 542 aaKnown RBP17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 EXOC4Q96A65 974 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 PPP1R2P1Q96PQ5 205 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 TRPV4Q9HBA0 871 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 PRDM6Q9NQX0 595 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 KIAA1522Q9P206 1035 aaPredicted RBP17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 UBA2Q9UBT2 640 aaPredicted RBP17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 DOCK8Q8NF50 2099 aa17.48■□□□□ 0.39
CCDC28B-202ENST00000421922 CBX4O00257 560 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 CHADO15335 359 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 PRAMEF11O60813 436 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 IVDP26440 423 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 SARNPP82979 210 aaKnown RBP17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 ITKQ08881 620 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 ZBTB17Q13105 803 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 HNRNPDQ14103 355 aaKnown RBP17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 PARP6Q2NL67 630 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 RNASEH2BQ5TBB1 312 aaKnown RBP17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 FAXCQ5TGI0 409 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 HIBCHQ6NVY1 386 aaPredicted RBP17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 CCDC25Q86WR0 208 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 MAFAQ8NHW3 353 aaPredicted RBP17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 ATP2A3Q93084 1043 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 FATE1Q969F0 183 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 MSLNLQ96KJ4 702 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms