RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 MT-CYBP00156 380 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 SERPIND1P05546 499 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 ABHD2P08910 425 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 NUDT2P50583 147 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 INTS6LQ5JSJ4 861 aaKnown RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 HECTD3Q5T447 861 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 RASAL3Q86YV0 1011 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 TEX9Q8N6V9 391 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 CERS2Q96G23 380 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 ZNF558Q96NG5 402 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 HNRNPABQ99729 332 aaKnown RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 IGFLR1Q9H665 355 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 NSMCE4AQ9NXX6 385 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 TIAM2Q8IVF5 1701 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 TCRBV7S3A2A0A539 114 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 TPST1O60507 370 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 ELF3P78545 371 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 RAB6CQ53S08 254 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 MFSD5Q6N075 450 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 LZTR1Q8N653 840 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 C12orf50Q8NA57 414 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 NKD2Q969F2 451 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 PAAF1Q9BRP4 392 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 TTPALQ9BTX7 342 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 UBE2OQ9C0C9 1292 aaKnown RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 RAB6CQ9H0N0 254 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 AGO3Q9H9G7 860 aaKnown RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 UBA2Q9UBT2 640 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 RNF112Q9ULX5 631 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 CDYLQ9Y232 598 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 ACTL7BQ9Y614 415 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 STYXL1Q9Y6J8 313 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 RNF103-CHMP3A0A140T963 221 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 FAM237BA0A1B0GVD1 139 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 SELPP16109 830 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 TFE3P19532 575 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 PBLDP30039 288 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 POU4F1Q01851 419 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 CYP1B1Q16678 543 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 VARS2Q5ST30 1063 aaKnown RBP11.38□□□□□ -0.59
PTPRF-204ENST00000412568 MON1AQ86VX9 555 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 OSTM1Q86WC4 334 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 MFN1Q8IWA4 741 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 TRIB2Q92519 343 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 CMTM5Q96DZ9 223 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 MFSD3Q96ES6 412 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 PTPN18Q99952 460 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 CHRAC1Q9NRG0 131 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 GRIN2DO15399 1336 aa11.38□□□□□ -0.59
PTPRF-204ENST00000412568 TMEM63AO94886 807 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 UBTFL6P0CB48 400 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-204ENST00000412568 PTPN4P29074 926 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 SOX4Q06945 474 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-204ENST00000412568 CLEC20AQ6ZU45 233 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 ADCK2Q7Z695 626 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 SAPCD2Q86UD0 394 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 CYP4X1Q8N118 509 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 PGBD3Q8N328 593 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 ICA1LQ8NDH6 482 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 RNF217Q8TC41 542 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 MCRS1Q96EZ8 462 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 FTHL17Q9BXU8 183 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 RGS18Q9NS28 235 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 MORF4L1Q9UBU8 362 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 GGA2Q9UJY4 613 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 PACSIN3Q9UKS6 424 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 ANGPT2O15123 496 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 ACRP10323 421 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 ABL2P42684 1182 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 HDAC4P56524 1084 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 DAOAP59103 153 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 PITX1P78337 314 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-204ENST00000412568 PTP4A2Q12974 167 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 GALNT3Q14435 633 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 CRYMQ14894 314 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 PDK4Q16654 411 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 USP41Q3LFD5 358 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 SYTL3Q4VX76 610 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 ARHGAP15Q53QZ3 475 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 TTC23LQ6PF05 361 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 ANKS3Q6ZW76 656 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 ZNF467Q7Z7K2 595 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-204ENST00000412568 LDB1Q86U70 411 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-204ENST00000412568 CNPY4Q8N129 248 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 OSBPL7Q9BZF2 842 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 ZYG11BQ9C0D3 744 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 DRC3Q9H069 523 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 MRPL17Q9NRX2 175 aaKnown RBP11.37□□□□□ -0.59
PTPRF-204ENST00000412568 TBC1D13Q9NVG8 400 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 UXTQ9UBK9 157 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-204ENST00000412568 ADAM28Q9UKQ2 775 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 COL4A1P02462 1669 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 AMHP03971 560 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 HSPA8P11142 646 aaKnown RBP11.37□□□□□ -0.59
PTPRF-204ENST00000412568 FMO4P31512 558 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 SLC1A6P48664 564 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 COPAP53621 1224 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 SATB1Q01826 763 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 SLC1A5Q15758 541 aa11.37□□□□□ -0.59
PTPRF-204ENST00000412568 GALNTL6Q49A17 601 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms