RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 HNRNPCL3B7ZW38 293 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 KCNK1O00180 336 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 HOXA2O43364 376 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 RECQL5O94762 991 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 SHBGP04278 402 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 CYP1A2P05177 515 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 HNRNPCL4P0DMR1 293 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 VCLP18206 1134 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 MMP14P50281 582 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 PKNOX1P55347 436 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 ZNF280DQ6N043 979 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 PGBD3Q8N328 593 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 BHLHE22Q8NFJ8 381 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 ZSCAN18Q8TBC5 510 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 UCMAQ8WVF2 138 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 STARD8Q92502 1023 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 ZNF224Q9NZL3 707 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 ZMYM2Q9UBW7 1377 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 TRIM43BA6NCK2 446 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 STMND1H3BQB6 276 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 ACKR2O00590 384 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 ADCY6O43306 1168 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 PARNO95453 639 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 CLTBP09497 229 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 PTDSS1P48651 473 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 HK2P52789 917 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 SOX10P56693 466 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 TTC23Q5W5X9 447 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 ARCQ7LC44 396 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 SAMD7Q7Z3H4 446 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 LPCAT1Q8NF37 534 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 MTMR9Q96QG7 549 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 RIBC2Q9H4K1 309 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 ENTPD7Q9NQZ7 604 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 SH3BP4Q9P0V3 963 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 TRPC4Q9UBN4 977 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 PFDN2Q9UHV9 154 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 RABL2BQ9UNT1 228 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 PPP2R3BQ9Y5P8 575 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 DDTLA6NHG4 134 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 CBX4O00257 560 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 SHMT1P34896 483 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 FLT3P36888 993 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 RETSATQ6NUM9 610 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 MILR1Q7Z6M3 343 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 C8orf59Q8N0T1 100 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 DEFB106AQ8N104 65 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 FBXW8Q8N3Y1 598 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 ACMSDQ8TDX5 336 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 RASSF5Q8WWW0 418 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 ITFG2Q969R8 447 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 FAM129BQ96TA1 746 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 FBXO44Q9H4M3 255 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 PTGES3LE9PB15 166 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 SEC22BO75396 215 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 KRT36O76013 467 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 CKMP06732 381 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 LBPP18428 481 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 STARP49675 285 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 DGKKQ5KSL6 1271 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 DUPD1Q68J44 220 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 MZT2BQ6NZ67 158 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 CES3Q6UWW8 571 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 LRRC55Q6ZSA7 311 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 KCNK18Q7Z418 384 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 HERC6Q8IVU3 1022 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 ADHFE1Q8IWW8 467 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 FBXO16Q8IX29 292 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 CDK20Q8IZL9 346 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 CYP2W1Q8TAV3 490 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 HPS1Q92902 700 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 TSEN34Q9BSV6 310 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 STN1Q9H668 368 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 CDHR5Q9HBB8 845 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 GAKO14976 1311 aa10.41□□□□□ -0.74
LIMCH1-203ENST00000396595 F8VP50 259 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 RGS14O43566 566 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 ALOX5P09917 674 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 ZSCAN5DPP0CG00 497 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 S100A3P33764 101 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 C16orf46Q6P387 395 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 RNF180Q86T96 592 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 ZNF614Q8N883 585 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 ART4Q93070 314 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 SMAD5Q99717 465 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 IL22Q9GZX6 179 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 TLR8Q9NR97 1041 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 AAASQ9NRG9 546 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 RPS6KB2Q9UBS0 482 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 A0A0A0MRY4 1105 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 TPP1O14773 563 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 IL1R1P14778 569 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 YBX3P16989 372 aaKnown RBP eCLIP10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 NR1H2P55055 460 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 VBP1P61758 197 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 KCNJ2P63252 427 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 C15orf59Q2T9L4 293 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 ZCCHC8Q6NZY4 707 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 MARK2Q7KZI7 788 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 EPHX4Q8IUS5 362 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms