RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 ARMC2Q8NEN0 867 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 FCRL3Q96P31 734 aaPredicted RBP15.25■□□□□ 0.03
CBX3-202ENST00000396386 NPHS2Q9NP85 383 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 NDFIP2Q9NV92 336 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.25■□□□□ 0.033e-9■□□□□ 9.1
CBX3-202ENST00000396386 SAGE1Q9NXZ1 904 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 MPP6Q9NZW5 540 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 SOX13Q9UN79 622 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 PSAT1Q9Y617 370 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 MIA3Q5JRA6 1907 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.25■□□□□ 0.03
CBX3-202ENST00000396386 TPP1O14773 563 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 ATP9BO43861 1147 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 TBC1D4O60343 1298 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 GLRA3O75311 464 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 NEBLO76041 1014 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 GALTP07902 379 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 RHOQP17081 205 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 GEMP55040 296 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 RPL10AP62906 217 aaKnown RBP15.25■□□□□ 0.03
CBX3-202ENST00000396386 BNIP1Q12981 228 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 SMAD1Q15797 465 aaKnown RBP15.25■□□□□ 0.03
CBX3-202ENST00000396386 CERCAMQ5T4B2 595 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 GRTP1Q5TC63 336 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 RNF19BQ6ZMZ0 732 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 CRIPAKQ8N1N5 446 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 TBL1YQ9BQ87 522 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 TTPALQ9BTX7 342 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 ZYG11BQ9C0D3 744 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 PRDM5Q9NQX1 630 aaPredicted RBP15.25■□□□□ 0.03
CBX3-202ENST00000396386 DONSONQ9NYP3 566 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 UBP1Q9NZI7 540 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 PPARGC1AQ9UBK2 798 aaKnown RBP15.25■□□□□ 0.03
CBX3-202ENST00000396386 SLC27A5Q9Y2P5 690 aa15.25■□□□□ 0.03
CBX3-202ENST00000396386 HTTP42858 3142 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 ZCWPW2A0A1B0GU75 182 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 VNN2O95498 520 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 PBX3P40426 434 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 PAPOLAP51003 745 aaKnown RBP15.24■□□□□ 0.03
CBX3-202ENST00000396386 NCALDP61601 193 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 TAF10Q12962 218 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 PSMD5Q16401 504 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 MS4A13Q5J8X5 152 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 C10orf120Q5SQS8 335 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 FBXW10Q5XX13 1052 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 RSPO2Q6UXX9 243 aaPredicted RBP15.24■□□□□ 0.03
CBX3-202ENST00000396386 PACS2Q86VP3 889 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 ZNF683Q8IZ20 524 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 RAB3IL1Q8TBN0 382 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 SCLYQ96I15 445 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 BTN2A3PQ96KV6 586 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 RBBP8Q99708 897 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 TRIM55Q9BYV6 548 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 HIPK3Q9H422 1215 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 ECT2Q9H8V3 914 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 SLC40A1Q9NP59 571 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 PAK6Q9NQU5 681 aaPredicted RBP15.24■□□□□ 0.03
CBX3-202ENST00000396386 IL1RAPL1Q9NZN1 696 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 MARCH2Q9P0N8 246 aa15.24■□□□□ 0.03
CBX3-202ENST00000396386 CFAP73A6NFT4 308 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 NT5C1B-RDH14C9J2C7 533 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 CXCL10P02778 98 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 ALDOAP04075 364 aaKnown RBP15.23■□□□□ 0.03
CBX3-202ENST00000396386 HLA-DQB2P05538 268 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 NDST2P52849 883 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 PDE1BQ01064 536 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 DBN1Q16643 649 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 STXBP5Q5T5C0 1151 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 ATG16L1Q676U5 607 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 KYAT3Q6YP21 454 aaKnown RBP15.23■□□□□ 0.03
CBX3-202ENST00000396386 TMEM173Q86WV6 379 aaPredicted RBP15.23■□□□□ 0.03
CBX3-202ENST00000396386 UMODL1-AS1Q8N2C9 162 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 IPMKQ8NFU5 416 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 SPATA22Q8NHS9 363 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 ATP2A3Q93084 1043 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 ZNF419Q96HQ0 510 aaPredicted RBP15.23■□□□□ 0.03
CBX3-202ENST00000396386 DEFB118Q96PH6 123 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 FICDQ9BVA6 458 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 CRISPLD1Q9H336 500 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 TMEM248Q9NWD8 314 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 IPO11Q9UI26 975 aaKnown RBP15.23■□□□□ 0.03
CBX3-202ENST00000396386 C2CD2LO14523 706 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 HGSO14964 777 aaPredicted RBP15.23■□□□□ 0.03
CBX3-202ENST00000396386 BIRC5O15392 142 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 PARNO95453 639 aaKnown RBP15.23■□□□□ 0.03
CBX3-202ENST00000396386 IGLV3-27P01718 113 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 SPRP35270 261 aaPredicted RBP15.23■□□□□ 0.03
CBX3-202ENST00000396386 SERPINB8P50452 374 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 OVGP1Q12889 678 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 ACBD5Q5T8D3 534 aaPredicted RBP15.23■□□□□ 0.03
CBX3-202ENST00000396386 PRSS55Q6UWB4 352 aaPredicted RBP15.23■□□□□ 0.03
CBX3-202ENST00000396386 KCNMB4Q86W47 210 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 MIB1Q86YT6 1006 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.23■□□□□ 0.03
CBX3-202ENST00000396386 ANKLE1Q8NAG6 615 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 BCL7CQ8WUZ0 217 aaPredicted RBP15.23■□□□□ 0.03
CBX3-202ENST00000396386 ERP27Q96DN0 273 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 LRRC37BQ96QE4 947 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 MECRQ9BV79 373 aa15.23■□□□□ 0.03
CBX3-202ENST00000396386 MYLK2Q9H1R3 596 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms