RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TEX9Q8N6V9 391 aa13.65□□□□□ -0.23
CCDC3-202ENST00000378839 SMC1BQ8NDV3 1235 aa13.65□□□□□ -0.23
CCDC3-202ENST00000378839 ADAM2Q99965 735 aa13.65□□□□□ -0.23
CCDC3-202ENST00000378839 TRMT13Q9NUP7 481 aaKnown RBP13.65□□□□□ -0.23
CCDC3-202ENST00000378839 ARHGEF38Q9NXL2 777 aa13.65□□□□□ -0.23
CCDC3-202ENST00000378839 A0A0U1RQF3 1178 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 DFFAO00273 331 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 ZNF623O75123 536 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 SBK3P0C264 359 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 CCND3P30281 292 aaPredicted RBP13.64□□□□□ -0.23
CCDC3-202ENST00000378839 SATB1Q01826 763 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 NAB1Q13506 487 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 ITGA9Q13797 1035 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 RCN2Q14257 317 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 KCNA10Q16322 511 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 SDHAF4Q5VUM1 108 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 DENND5AQ6IQ26 1287 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 DCLRE1AQ6PJP8 1040 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 C14orf80Q86SX3 495 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 RNF217Q8TC41 542 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 IARS2Q9NSE4 1012 aaKnown RBP13.64□□□□□ -0.23
CCDC3-202ENST00000378839 RAD54BQ9Y620 910 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 NYNRINQ9P2P1 1898 aaKnown RBP13.64□□□□□ -0.23
CCDC3-202ENST00000378839 EME2A4GXA9 379 aaPredicted RBP13.64□□□□□ -0.23
CCDC3-202ENST00000378839 FAM155AB1AL88 458 aaPredicted RBP13.64□□□□□ -0.23
CCDC3-202ENST00000378839 GPR182O15218 404 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 NCAM2O15394 837 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 CACNG3O60359 315 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 F9P00740 461 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 CCR10P46092 362 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 ERFP50548 548 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 ARMC3Q5W041 872 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 RSPH3Q86UC2 560 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 RTN4RL1Q86UN2 441 aaPredicted RBP13.64□□□□□ -0.23
CCDC3-202ENST00000378839 ZNF280BQ86YH2 543 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 PIWIL2Q8TC59 973 aaKnown RBP13.64□□□□□ -0.23
CCDC3-202ENST00000378839 MICAL1Q8TDZ2 1067 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 EPAS1Q99814 870 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 SLC39A8Q9C0K1 460 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 DMAP1Q9NPF5 467 aaPredicted RBP13.64□□□□□ -0.23
CCDC3-202ENST00000378839 BFARQ9NZS9 450 aa13.64□□□□□ -0.23
CCDC3-202ENST00000378839 TDRD15B5MCY1 1934 aaKnown RBP13.63□□□□□ -0.23
CCDC3-202ENST00000378839 MEI4A8MW99 385 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 MAFKO60675 156 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 HNRNPCL1O60812 293 aaKnown RBP13.63□□□□□ -0.23
CCDC3-202ENST00000378839 PAGE1O75459 146 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 ARNTP27540 789 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 PTDSS1P48651 473 aaKnown RBP13.63□□□□□ -0.23
CCDC3-202ENST00000378839 GPR15P49685 360 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 IDH3AP50213 366 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 MANEALQ5VSG8 457 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 CCSAPQ6IQ19 270 aaPredicted RBP13.63□□□□□ -0.23
CCDC3-202ENST00000378839 FAM43BQ6ZT52 329 aaPredicted RBP13.63□□□□□ -0.23
CCDC3-202ENST00000378839 KCNMB4Q86W47 210 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 KLHDC8BQ8IXV7 354 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 PNPLA1Q8N8W4 532 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 IRGQQ8WZA9 623 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 RNF34Q969K3 372 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 FAM167BQ9BTA0 163 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 WWP1Q9H0M0 922 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 C20orf96Q9NUD7 363 aaPredicted RBP13.63□□□□□ -0.23
CCDC3-202ENST00000378839 PATJQ8NI35 1801 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 SERPINE1P05121 402 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 SLC5A3P53794 718 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 CDK18Q07002 472 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 CACNB2Q08289 660 aaPredicted RBP13.63□□□□□ -0.23
CCDC3-202ENST00000378839 GRM3Q14832 879 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 PDZD4Q76G19 769 aaPredicted RBP13.63□□□□□ -0.23
CCDC3-202ENST00000378839 RILPQ96NA2 401 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 SLC2A6Q9UGQ3 507 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 TRHDEQ9UKU6 1024 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 A0A096LPK6 155 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 IRAK2O43187 625 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 C2P06681 752 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 SERPINA6P08185 405 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 CPOXP36551 454 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 ABL2P42684 1182 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 USP4Q13107 963 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 IHHQ14623 411 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 OVOS1Q6IE37 1185 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 PPP1R14CQ8TAE6 165 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 SPDL1Q96EA4 605 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 FERMT1Q9BQL6 677 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 OSBPL2Q9H1P3 480 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 MPP6Q9NZW5 540 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 SOX13Q9UN79 622 aa13.63□□□□□ -0.23
CCDC3-202ENST00000378839 DDHD2O94830 711 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 SORBS2O94875 1100 aaKnown RBP13.62□□□□□ -0.23
CCDC3-202ENST00000378839 RALBP11234 206 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 CPA3P15088 417 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 MX2P20592 715 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 FLT3LGP49771 235 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 INSCQ1MX18 579 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 TRIM71Q2Q1W2 868 aaKnown RBP13.62□□□□□ -0.23
CCDC3-202ENST00000378839 RGMBQ6NW40 437 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 ZNF598Q86UK7 904 aaKnown RBP13.62□□□□□ -0.23
CCDC3-202ENST00000378839 MAPK15Q8TD08 544 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 C1QTNF1Q9BXJ1 281 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 RRN3Q9NYV6 651 aa13.62□□□□□ -0.23
CCDC3-202ENST00000378839 KIF1CO43896 1103 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms